RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 AMACRQ9UHK6 382 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 CDC23Q9UJX2 597 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 MRFAP1Q9Y605 127 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 THADAQ6YHU6 1953 aa9.41□□□□□ -0.9
VPS35-211ENST00000569950 CACNA1EQ15878 2313 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 ZNF106Q9H2Y7 1883 aaKnown RBP9.4□□□□□ -0.9
VPS35-211ENST00000569950 TP73O15350 636 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 KCNN4O15554 427 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 HTRA2O43464 458 aaPredicted RBP9.4□□□□□ -0.9
VPS35-211ENST00000569950 ATG13O75143 517 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 PHF2O75151 1096 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 GCATO75600 419 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 LEFTY1O75610 366 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 ZSCAN5DPP0CG00 497 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 IVDP26440 423 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 COILP38432 576 aaPredicted RBP9.4□□□□□ -0.9
VPS35-211ENST00000569950 HSPA9P38646 679 aaKnown RBP9.4□□□□□ -0.9
VPS35-211ENST00000569950 CXCL12P48061 93 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 RENBPP51606 427 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 DGKEP52429 567 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 TAS2R38P59533 333 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 MSLNQ13421 630 aaPredicted RBP9.4□□□□□ -0.9
VPS35-211ENST00000569950 PTPRRQ15256 657 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 CST6Q15828 149 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 MAP7D1Q3KQU3 841 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 ARSIQ5FYB1 569 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 ANKRD20A2Q5SQ80 823 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 PIP5KL1Q5T9C9 394 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 ANKRD20A1Q5TYW2 823 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 AGBL4Q5VU57 503 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 ANKRD20A3Q5VUR7 823 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 KCTD11Q693B1 232 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 DARS2Q6PI48 645 aaKnown RBP9.4□□□□□ -0.9
VPS35-211ENST00000569950 METTL3Q86U44 580 aaKnown RBP9.4□□□□□ -0.9
VPS35-211ENST00000569950 TMPRSS6Q8IU80 811 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 CAMK1DQ8IU85 385 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 MMAAQ8IVH4 418 aaKnown RBP9.4□□□□□ -0.9
VPS35-211ENST00000569950 LRRN4CLQ8ND94 238 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 TMIEQ8NEW7 156 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 SPATA22Q8NHS9 363 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 PIP4K2CQ8TBX8 421 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 GRIN3AQ8TCU5 1115 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 SLCO2A1Q92959 643 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 GDAP1L1Q96MZ0 367 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 AGAP3Q96P47 875 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 SEMA3CQ99985 751 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 HEPHQ9BQS7 1158 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 CINPQ9BW66 212 aaPredicted RBP9.4□□□□□ -0.9
VPS35-211ENST00000569950 DDX47Q9H0S4 455 aaKnown RBP9.4□□□□□ -0.9
VPS35-211ENST00000569950 SLC25A51Q9H1U9 297 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 GBA3Q9H227 469 aa9.4□□□□□ -0.9
VPS35-211ENST00000569950 TP53BP1Q12888 1972 aaPredicted RBP9.39□□□□□ -0.91
VPS35-211ENST00000569950 BHMG1C9JSJ3 638 aaPredicted RBP9.39□□□□□ -0.91
VPS35-211ENST00000569950 KIF2AO00139 706 aaPredicted RBP9.39□□□□□ -0.91
VPS35-211ENST00000569950 KRIT1O00522 736 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 DLL1O00548 723 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 MID1O15344 667 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 APBB3O95704 486 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 POP4O95707 220 aaKnown RBP9.39□□□□□ -0.91
VPS35-211ENST00000569950 IGSF6O95976 241 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 MT-CYBP00156 380 aaPredicted RBP9.39□□□□□ -0.91
VPS35-211ENST00000569950 TUBB4AP04350 444 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 UGT2B4P06133 528 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 PDHA1P08559 390 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 ITIH2P19823 946 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 PSMB4P28070 264 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 RPL22P35268 128 aaKnown RBP9.39□□□□□ -0.91
VPS35-211ENST00000569950 ADRA1AP35348 466 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 NNMTP40261 264 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 PI4KAP42356 2102 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 ABL2P42684 1182 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 PSMD8P48556 350 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 SCNN1BP51168 640 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 TPMTP51580 245 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 CCR3P51677 355 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 AP1S1P61966 158 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 SNRPD1P62314 119 aaKnown RBP9.39□□□□□ -0.91
VPS35-211ENST00000569950 CNTN1Q12860 1018 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 OLIG2Q13516 323 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 ZNF235Q14590 738 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 SLC14A2Q15849 920 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 RALGPS1Q5JS13 557 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 CCDC181Q5TID7 509 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 HEATR6Q6AI08 1181 aaKnown RBP9.39□□□□□ -0.91
VPS35-211ENST00000569950 ANO7Q6IWH7 933 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 PARS2Q7L3T8 475 aaKnown RBP9.39□□□□□ -0.91
VPS35-211ENST00000569950 CACUL1Q86Y37 369 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 CAMKK1Q8N5S9 505 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 FAM160A2Q8N612 972 aaPredicted RBP9.39□□□□□ -0.91
VPS35-211ENST00000569950 SPATA4Q8NEY3 305 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 PRSS33Q8NF86 280 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 TSTD1Q8NFU3 115 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 HMGB4Q8WW32 186 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 MAIP1Q8WWC4 291 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 OR8D1Q8WZ84 308 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 MRGPRX2Q96LB1 330 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 FCRL5Q96RD9 977 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 RBM15Q96T37 977 aaKnown RBP eCLIP9.39□□□□□ -0.91
VPS35-211ENST00000569950 VAT1Q99536 393 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 TDRD1Q9BXT4 1180 aaKnown RBP9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms