RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 GATAD2AQ86YP4 633 aa18.65■□□□□ 0.58
CLN3-214ENST00000565140 ARHGAP12Q8IWW6 846 aa18.65■□□□□ 0.58
CLN3-214ENST00000565140 CHCHD4Q8N4Q1 142 aa18.65■□□□□ 0.58
CLN3-214ENST00000565140 NPWQ8N729 165 aa18.65■□□□□ 0.58
CLN3-214ENST00000565140 RNF214Q8ND24 703 aa18.65■□□□□ 0.58
CLN3-214ENST00000565140 GDAP1L1Q96MZ0 367 aa18.65■□□□□ 0.58
CLN3-214ENST00000565140 KLHL32Q96NJ5 620 aa18.65■□□□□ 0.58
CLN3-214ENST00000565140 NCAPGQ9BPX3 1015 aa18.65■□□□□ 0.58
CLN3-214ENST00000565140 NUP85Q9BW27 656 aa18.65■□□□□ 0.58
CLN3-214ENST00000565140 GGT7Q9UJ14 662 aa18.65■□□□□ 0.58
CLN3-214ENST00000565140 MFHAS1Q9Y4C4 1052 aa18.65■□□□□ 0.58
CLN3-214ENST00000565140 GOLGA4Q13439 2230 aaKnown RBP18.65■□□□□ 0.58
CLN3-214ENST00000565140 SPINT1O43278 529 aa18.64■□□□□ 0.57
CLN3-214ENST00000565140 AP1G1O43747 822 aa18.64■□□□□ 0.57
CLN3-214ENST00000565140 IGSF6O95976 241 aa18.64■□□□□ 0.57
CLN3-214ENST00000565140 DPYSQ14117 519 aa18.64■□□□□ 0.57
CLN3-214ENST00000565140 PIGHQ14442 188 aaPredicted RBP18.64■□□□□ 0.57
CLN3-214ENST00000565140 SPECC1LQ69YQ0 1117 aa18.64■□□□□ 0.57
CLN3-214ENST00000565140 GDPD4Q6W3E5 623 aa18.64■□□□□ 0.57
CLN3-214ENST00000565140 ARHGAP36Q6ZRI8 547 aa18.64■□□□□ 0.57
CLN3-214ENST00000565140 TP53INP2Q8IXH6 220 aa18.64■□□□□ 0.57
CLN3-214ENST00000565140 FEM1CQ96JP0 617 aa18.64■□□□□ 0.57
CLN3-214ENST00000565140 EXOC2Q96KP1 924 aa18.64■□□□□ 0.57
CLN3-214ENST00000565140 ZWILCHQ9H900 591 aa18.64■□□□□ 0.57
CLN3-214ENST00000565140 ERVMER34-1Q9H9K5 563 aa18.64■□□□□ 0.57
CLN3-214ENST00000565140 TOR4AQ9NXH8 423 aa18.64■□□□□ 0.57
CLN3-214ENST00000565140 DONSONQ9NYP3 566 aa18.64■□□□□ 0.57
CLN3-214ENST00000565140 UBA2Q9UBT2 640 aaPredicted RBP18.64■□□□□ 0.57
CLN3-214ENST00000565140 ANAPC7Q9UJX3 599 aa18.64■□□□□ 0.57
CLN3-214ENST00000565140 ITM2BQ9Y287 266 aa18.64■□□□□ 0.57
CLN3-214ENST00000565140 COL5A1P20908 1838 aaPredicted RBP18.63■□□□□ 0.57
CLN3-214ENST00000565140 ARHGAP42A6NI28 874 aa18.63■□□□□ 0.57
CLN3-214ENST00000565140 CBFA2T2O43439 604 aa18.63■□□□□ 0.57
CLN3-214ENST00000565140 PAK4O96013 591 aaPredicted RBP18.63■□□□□ 0.57
CLN3-214ENST00000565140 ATXN1LP0C7T5 689 aaKnown RBP18.63■□□□□ 0.57
CLN3-214ENST00000565140 RARAP10276 462 aa18.63■□□□□ 0.57
CLN3-214ENST00000565140 GRK6P43250 576 aa18.63■□□□□ 0.57
CLN3-214ENST00000565140 CLDN2P57739 230 aa18.63■□□□□ 0.57
CLN3-214ENST00000565140 RPS21P63220 83 aaKnown RBP18.63■□□□□ 0.57
CLN3-214ENST00000565140 OVGP1Q12889 678 aa18.63■□□□□ 0.57
CLN3-214ENST00000565140 BNIP3Q12983 259 aa18.63■□□□□ 0.57
CLN3-214ENST00000565140 MAPK8IP2Q13387 824 aaPredicted RBP18.63■□□□□ 0.57
CLN3-214ENST00000565140 DPYSL2Q16555 572 aa18.63■□□□□ 0.57
CLN3-214ENST00000565140 BOLA3Q53S33 107 aa18.63■□□□□ 0.57
CLN3-214ENST00000565140 LRRC73Q5JTD7 316 aa18.63■□□□□ 0.57
CLN3-214ENST00000565140 RAB44Q7Z6P3 723 aaPredicted RBP18.63■□□□□ 0.57
CLN3-214ENST00000565140 NIPA2Q8N8Q9 360 aa18.63■□□□□ 0.57
CLN3-214ENST00000565140 SAP25Q8TEE9 199 aa18.63■□□□□ 0.57
CLN3-214ENST00000565140 HSPH1Q92598 858 aa18.63■□□□□ 0.57
CLN3-214ENST00000565140 KLHDC7BQ96G42 594 aa18.63■□□□□ 0.57
CLN3-214ENST00000565140 DNAJC7Q99615 494 aa18.63■□□□□ 0.57
CLN3-214ENST00000565140 CDC6Q99741 560 aa18.63■□□□□ 0.57
CLN3-214ENST00000565140 OSBPL1AQ9BXW6 950 aa18.63■□□□□ 0.57
CLN3-214ENST00000565140 SLC17A9Q9BYT1 436 aa18.63■□□□□ 0.57
CLN3-214ENST00000565140 ETNK2Q9NVF9 386 aa18.63■□□□□ 0.57
CLN3-214ENST00000565140 IP6K2Q9UHH9 426 aa18.63■□□□□ 0.57
CLN3-214ENST00000565140 KLK13Q9UKR3 277 aa18.63■□□□□ 0.57
CLN3-214ENST00000565140 IGLON5A6NGN9 336 aa18.62■□□□□ 0.57
CLN3-214ENST00000565140 DFFAO00273 331 aa18.62■□□□□ 0.57
CLN3-214ENST00000565140 RAD51BO15315 384 aa18.62■□□□□ 0.57
CLN3-214ENST00000565140 ITIH2P19823 946 aa18.62■□□□□ 0.57
CLN3-214ENST00000565140 HNRNPA2B1P22626 353 aaKnown RBP18.62■□□□□ 0.57
CLN3-214ENST00000565140 AMPD1P23109 780 aa18.62■□□□□ 0.57
CLN3-214ENST00000565140 AKT2P31751 481 aa18.62■□□□□ 0.57
CLN3-214ENST00000565140 RXRGP48443 463 aa18.62■□□□□ 0.57
CLN3-214ENST00000565140 ZNF135P52742 658 aaPredicted RBP18.62■□□□□ 0.57
CLN3-214ENST00000565140 SLC25A11Q02978 314 aaKnown RBP18.62■□□□□ 0.57
CLN3-214ENST00000565140 RAD51Q06609 339 aa18.62■□□□□ 0.57
CLN3-214ENST00000565140 ASTE1Q2TB18 679 aaPredicted RBP18.62■□□□□ 0.57
CLN3-214ENST00000565140 KIAA1161Q6NSJ0 714 aa18.62■□□□□ 0.57
CLN3-214ENST00000565140 GCNT7Q6ZNI0 430 aa18.62■□□□□ 0.57
CLN3-214ENST00000565140 POLNQ7Z5Q5 900 aa18.62■□□□□ 0.57
CLN3-214ENST00000565140 TTC7BQ86TV6 843 aa18.62■□□□□ 0.57
CLN3-214ENST00000565140 CPNE8Q86YQ8 564 aa18.62■□□□□ 0.57
CLN3-214ENST00000565140 VSTM4Q8IW00 320 aa18.62■□□□□ 0.57
CLN3-214ENST00000565140 OR13H1Q8NG92 308 aa18.62■□□□□ 0.57
CLN3-214ENST00000565140 OR8K1Q8NGG5 319 aa18.62■□□□□ 0.57
CLN3-214ENST00000565140 RAB7BQ96AH8 199 aa18.62■□□□□ 0.57
CLN3-214ENST00000565140 PACSIN1Q9BY11 444 aa18.62■□□□□ 0.57
CLN3-214ENST00000565140 CPEB1Q9BZB8 566 aaKnown RBP18.62■□□□□ 0.57
CLN3-214ENST00000565140 CAAP1Q9H8G2 361 aa18.62■□□□□ 0.57
CLN3-214ENST00000565140 STAU2Q9NUL3 570 aaKnown RBP eCLIP18.62■□□□□ 0.57
CLN3-214ENST00000565140 KNTC1P50748 2209 aa18.61■□□□□ 0.57
CLN3-214ENST00000565140 H3BRJ5 948 aa18.61■□□□□ 0.57
CLN3-214ENST00000565140 AREL1O15033 823 aa18.61■□□□□ 0.57
CLN3-214ENST00000565140 TSPAN6O43657 245 aa18.61■□□□□ 0.57
CLN3-214ENST00000565140 MAGEC1O60732 1142 aa18.61■□□□□ 0.57
CLN3-214ENST00000565140 TRIM16O95361 564 aa18.61■□□□□ 0.57
CLN3-214ENST00000565140 PIGNO95427 931 aa18.61■□□□□ 0.57
CLN3-214ENST00000565140 THEGLP0DJG4 465 aa18.61■□□□□ 0.57
CLN3-214ENST00000565140 TIMP2P16035 220 aa18.61■□□□□ 0.57
CLN3-214ENST00000565140 EPHA8P29322 1005 aaPredicted RBP18.61■□□□□ 0.57
CLN3-214ENST00000565140 RGRP47804 291 aa18.61■□□□□ 0.57
CLN3-214ENST00000565140 ARRB1P49407 418 aaPredicted RBP18.61■□□□□ 0.57
CLN3-214ENST00000565140 SLC18A3Q16572 532 aa18.61■□□□□ 0.57
CLN3-214ENST00000565140 KANSL1Q7Z3B3 1105 aa18.61■□□□□ 0.57
CLN3-214ENST00000565140 ABI3BPQ7Z7G0 1075 aa18.61■□□□□ 0.57
CLN3-214ENST00000565140 TSEN2Q8NCE0 465 aaKnown RBP18.61■□□□□ 0.57
CLN3-214ENST00000565140 ADAMTS14Q8WXS8 1223 aa18.61■□□□□ 0.57
CLN3-214ENST00000565140 BMFQ96LC9 184 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms