RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 CAMK2BQ13554 666 aa15.09■□□□□ 0.01
CLN3-213ENST00000565047 KIAA1161Q6NSJ0 714 aa15.09■□□□□ 0.01
CLN3-213ENST00000565047 FBXL19Q6PCT2 694 aa15.09■□□□□ 0.01
CLN3-213ENST00000565047 PSTKQ8IV42 348 aaKnown RBP15.09■□□□□ 0.01
CLN3-213ENST00000565047 ASB12Q8WXK4 309 aa15.09■□□□□ 0.01
CLN3-213ENST00000565047 RAB7BQ96AH8 199 aa15.09■□□□□ 0.01
CLN3-213ENST00000565047 FEM1CQ96JP0 617 aa15.09■□□□□ 0.01
CLN3-213ENST00000565047 EIF3CQ99613 913 aaKnown RBP15.09■□□□□ 0.01
CLN3-213ENST00000565047 KLHL11Q9NVR0 708 aa15.09■□□□□ 0.01
CLN3-213ENST00000565047 PCSK1NQ9UHG2 260 aa15.09■□□□□ 0.01
CLN3-213ENST00000565047 NENFQ9UMX5 172 aa15.09■□□□□ 0.01
CLN3-213ENST00000565047 POM121BA6NF01 834 aa15.08■□□□□ 0
CLN3-213ENST00000565047 KRIT1O00522 736 aa15.08■□□□□ 0
CLN3-213ENST00000565047 INSIG1O15503 277 aa15.08■□□□□ 0
CLN3-213ENST00000565047 TSPAN6O43657 245 aa15.08■□□□□ 0
CLN3-213ENST00000565047 MAGEC1O60732 1142 aa15.08■□□□□ 0
CLN3-213ENST00000565047 PRAMEF11O60813 436 aa15.08■□□□□ 0
CLN3-213ENST00000565047 UGT2B4P06133 528 aa15.08■□□□□ 0
CLN3-213ENST00000565047 THEGLP0DJG4 465 aa15.08■□□□□ 0
CLN3-213ENST00000565047 TCF4P15884 667 aa15.08■□□□□ 0
CLN3-213ENST00000565047 TIMP2P16035 220 aa15.08■□□□□ 0
CLN3-213ENST00000565047 HCAR3P49019 387 aa15.08■□□□□ 0
CLN3-213ENST00000565047 UBASH3AP57075 661 aa15.08■□□□□ 0
CLN3-213ENST00000565047 TPI1P60174 286 aa15.08■□□□□ 0
CLN3-213ENST00000565047 GDPD4Q6W3E5 623 aa15.08■□□□□ 0
CLN3-213ENST00000565047 ZSCAN30Q86W11 494 aa15.08■□□□□ 0
CLN3-213ENST00000565047 MARCH9Q86YJ5 346 aa15.08■□□□□ 0
CLN3-213ENST00000565047 EID2Q8N6I1 236 aa15.08■□□□□ 0
CLN3-213ENST00000565047 NPWQ8N729 165 aa15.08■□□□□ 0
CLN3-213ENST00000565047 KLHL32Q96NJ5 620 aa15.08■□□□□ 0
CLN3-213ENST00000565047 MYOCQ99972 504 aa15.08■□□□□ 0
CLN3-213ENST00000565047 OSBPL1AQ9BXW6 950 aa15.08■□□□□ 0
CLN3-213ENST00000565047 CPEB1Q9BZB8 566 aaKnown RBP15.08■□□□□ 0
CLN3-213ENST00000565047 SLC39A8Q9C0K1 460 aa15.08■□□□□ 0
CLN3-213ENST00000565047 DHX35Q9H5Z1 703 aaKnown RBP15.08■□□□□ 0
CLN3-213ENST00000565047 DKK3Q9UBP4 350 aa15.08■□□□□ 0
CLN3-213ENST00000565047 FTSJ1Q9UET6 329 aa15.08■□□□□ 0
CLN3-213ENST00000565047 CAPN11Q9UMQ6 739 aa15.08■□□□□ 0
CLN3-213ENST00000565047 ITM2BQ9Y287 266 aa15.08■□□□□ 0
CLN3-213ENST00000565047 PCDHGA1Q9Y5H4 931 aa15.08■□□□□ 0
CLN3-213ENST00000565047 TSPAN11A1L157 253 aa15.07■□□□□ 0
CLN3-213ENST00000565047 IGLON5A6NGN9 336 aa15.07■□□□□ 0
CLN3-213ENST00000565047 TRIM38O00635 465 aa15.07■□□□□ 0
CLN3-213ENST00000565047 ENC1O14682 589 aa15.07■□□□□ 0
CLN3-213ENST00000565047 LDOC1O95751 146 aaPredicted RBP15.07■□□□□ 0
CLN3-213ENST00000565047 GYPCP04921 128 aa15.07■□□□□ 0
CLN3-213ENST00000565047 MYBL1P10243 752 aa15.07■□□□□ 0
CLN3-213ENST00000565047 ERCC2P18074 760 aa15.07■□□□□ 0
CLN3-213ENST00000565047 ITIH2P19823 946 aa15.07■□□□□ 0
CLN3-213ENST00000565047 DGKAP23743 735 aa15.07■□□□□ 0
CLN3-213ENST00000565047 AKT2P31751 481 aa15.07■□□□□ 0
CLN3-213ENST00000565047 PCK1P35558 622 aa15.07■□□□□ 0
CLN3-213ENST00000565047 ACADVLP49748 655 aa15.07■□□□□ 0
CLN3-213ENST00000565047 PAPOLAP51003 745 aaKnown RBP15.07■□□□□ 0
CLN3-213ENST00000565047 DNAJC3Q13217 504 aa15.07■□□□□ 0
CLN3-213ENST00000565047 DPYSQ14117 519 aa15.07■□□□□ 0
CLN3-213ENST00000565047 PROX2Q3B8N5 592 aa15.07■□□□□ 0
CLN3-213ENST00000565047 INAVAQ3KP66 663 aa15.07■□□□□ 0
CLN3-213ENST00000565047 TPRG1LQ5T0D9 272 aa15.07■□□□□ 0
CLN3-213ENST00000565047 KYAT3Q6YP21 454 aaKnown RBP15.07■□□□□ 0
CLN3-213ENST00000565047 KDM7AQ6ZMT4 941 aa15.07■□□□□ 0
CLN3-213ENST00000565047 Q6ZSR6 202 aa15.07■□□□□ 0
CLN3-213ENST00000565047 RFX8Q6ZV50 586 aa15.07■□□□□ 0
CLN3-213ENST00000565047 TP53INP2Q8IXH6 220 aa15.07■□□□□ 0
CLN3-213ENST00000565047 FAM174AQ8TBP5 190 aa15.07■□□□□ 0
CLN3-213ENST00000565047 CENPTQ96BT3 561 aa15.07■□□□□ 0
CLN3-213ENST00000565047 ZNF653Q96CK0 615 aa15.07■□□□□ 0
CLN3-213ENST00000565047 IFT43Q96FT9 208 aa15.07■□□□□ 0
CLN3-213ENST00000565047 CELF6Q96J87 481 aaKnown RBP15.07■□□□□ 0
CLN3-213ENST00000565047 CNDP2Q96KP4 475 aaKnown RBP15.07■□□□□ 0
CLN3-213ENST00000565047 NSMCE3Q96MG7 304 aa15.07■□□□□ 0
CLN3-213ENST00000565047 GDAP1L1Q96MZ0 367 aa15.07■□□□□ 0
CLN3-213ENST00000565047 UCKL1Q9NWZ5 548 aa15.07■□□□□ 0
CLN3-213ENST00000565047 CWC15Q9P013 229 aaKnown RBP15.07■□□□□ 0
CLN3-213ENST00000565047 BZW2Q9Y6E2 419 aaKnown RBP15.07■□□□□ 0
CLN3-213ENST00000565047 TRPM6Q9BX84 2022 aa15.07■□□□□ 0
CLN3-213ENST00000565047 A0A087X0T9 212 aa15.06■□□□□ 0
CLN3-213ENST00000565047 GOLGA8CPA6NN73 597 aa15.06■□□□□ 0
CLN3-213ENST00000565047 SRRM3A6NNA2 597 aaPredicted RBP15.06■□□□□ 0
CLN3-213ENST00000565047 EEF2KO00418 725 aaKnown RBP15.06■□□□□ 0
CLN3-213ENST00000565047 BUB1BO60566 1050 aaPredicted RBP15.06■□□□□ 0
CLN3-213ENST00000565047 SERPING1P05155 500 aa15.06■□□□□ 0
CLN3-213ENST00000565047 FAM228BP0C875 321 aa15.06■□□□□ 0
CLN3-213ENST00000565047 RGRP47804 291 aa15.06■□□□□ 0
CLN3-213ENST00000565047 PFN3P60673 137 aa15.06■□□□□ 0
CLN3-213ENST00000565047 RHOAP61586 193 aa15.06■□□□□ 0
CLN3-213ENST00000565047 ZBED6P86452 979 aa15.06■□□□□ 0
CLN3-213ENST00000565047 FZD2Q14332 565 aa15.06■□□□□ 0
CLN3-213ENST00000565047 ACAP1Q15027 740 aa15.06■□□□□ 0
CLN3-213ENST00000565047 ZSCAN23Q3MJ62 389 aa15.06■□□□□ 0
CLN3-213ENST00000565047 TXNRD3NBQ6F5E7 133 aa15.06■□□□□ 0
CLN3-213ENST00000565047 DHRS13Q6UX07 377 aa15.06■□□□□ 0
CLN3-213ENST00000565047 ARHGAP36Q6ZRI8 547 aa15.06■□□□□ 0
CLN3-213ENST00000565047 RYBPQ8N488 228 aaPredicted RBP15.06■□□□□ 0
CLN3-213ENST00000565047 NIPA2Q8N8Q9 360 aa15.06■□□□□ 0
CLN3-213ENST00000565047 HCAR2Q8TDS4 363 aa15.06■□□□□ 0
CLN3-213ENST00000565047 TRIM11Q96F44 468 aa15.06■□□□□ 0
CLN3-213ENST00000565047 THAP2Q9H0W7 228 aa15.06■□□□□ 0
CLN3-213ENST00000565047 KLF15Q9UIH9 416 aa15.06■□□□□ 0
CLN3-213ENST00000565047 SCINQ9Y6U3 715 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms