RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 PTPN2P17706 415 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 EDN2P20800 178 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 KELP23276 732 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 TNFSF8P32971 234 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 GPR12P47775 334 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 CENPAP49450 140 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 GNAQP50148 359 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 DRG2P55039 364 aaKnown RBP4.94□□□□□ -1.62
LINC00560-201ENST00000564593 TMPRSS3P57727 454 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 PRKG2Q13237 762 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 PPP2R5BQ15173 497 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 SPATA1Q5VX52 437 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 CPLX2Q6PUV4 134 aaKnown RBP4.94□□□□□ -1.62
LINC00560-201ENST00000564593 TBC1D26Q86UD7 250 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 LURAP1LQ8IV03 231 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 ZDHHC23Q8IYP9 409 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 PDILTQ8N807 584 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 USP6NLQ92738 828 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 SMARCE1Q969G3 411 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 INTS12Q96CB8 462 aaKnown RBP4.94□□□□□ -1.62
LINC00560-201ENST00000564593 PERPQ96FX8 193 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 ZNF333Q96JL9 665 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 GLIS2Q9BZE0 524 aaPredicted RBP4.94□□□□□ -1.62
LINC00560-201ENST00000564593 MSRB1Q9NZV6 116 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 SEL1LQ9UBV2 794 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 KCNE2Q9Y6J6 123 aa4.94□□□□□ -1.62
LINC00560-201ENST00000564593 DYTNA2CJ06 578 aa4.93□□□□□ -1.62
LINC00560-201ENST00000564593 TYW5A2RUC4 315 aaKnown RBP4.93□□□□□ -1.62
LINC00560-201ENST00000564593 A6NNC1 897 aa4.93□□□□□ -1.62
LINC00560-201ENST00000564593 AP3D1O14617 1153 aa4.93□□□□□ -1.62
LINC00560-201ENST00000564593 TLX3O43711 291 aaPredicted RBP4.93□□□□□ -1.62
LINC00560-201ENST00000564593 PTP4A3O75365 173 aa4.93□□□□□ -1.62
LINC00560-201ENST00000564593 ZNF8P17098 575 aaPredicted RBP4.93□□□□□ -1.62
LINC00560-201ENST00000564593 CD38P28907 300 aa4.93□□□□□ -1.62
LINC00560-201ENST00000564593 PTGER1P34995 402 aa4.93□□□□□ -1.62
LINC00560-201ENST00000564593 MLH1P40692 756 aa4.93□□□□□ -1.62
LINC00560-201ENST00000564593 OLR1P78380 273 aa4.93□□□□□ -1.62
LINC00560-201ENST00000564593 FOXD4Q12950 439 aaPredicted RBP4.93□□□□□ -1.62
LINC00560-201ENST00000564593 MED22Q15528 200 aa4.93□□□□□ -1.62
LINC00560-201ENST00000564593 CCNG2Q16589 344 aa4.93□□□□□ -1.62
LINC00560-201ENST00000564593 HIST2H2ACQ16777 129 aaPredicted RBP4.93□□□□□ -1.62
LINC00560-201ENST00000564593 Q4G0T1 1027 aa4.93□□□□□ -1.62
LINC00560-201ENST00000564593 FAM205BPQ63HN1 556 aa4.93□□□□□ -1.62
LINC00560-201ENST00000564593 TXNDC8Q6A555 127 aa4.93□□□□□ -1.62
LINC00560-201ENST00000564593 B3GNT4Q9C0J1 378 aa4.93□□□□□ -1.62
LINC00560-201ENST00000564593 MUC13Q9H3R2 512 aa4.93□□□□□ -1.62
LINC00560-201ENST00000564593 SPATS2LQ9NUQ6 558 aaKnown RBP4.93□□□□□ -1.62
LINC00560-201ENST00000564593 SEPT11Q9NVA2 429 aaKnown RBP4.93□□□□□ -1.62
LINC00560-201ENST00000564593 NCKIPSDQ9NZQ3 722 aa4.93□□□□□ -1.62
LINC00560-201ENST00000564593 PTGFRNQ9P2B2 879 aa4.93□□□□□ -1.62
LINC00560-201ENST00000564593 A0A0G2JK05 382 aa4.92□□□□□ -1.62
LINC00560-201ENST00000564593 EIF3CLB5ME19 914 aaKnown RBP4.92□□□□□ -1.62
LINC00560-201ENST00000564593 SNAP23O00161 211 aa4.92□□□□□ -1.62
LINC00560-201ENST00000564593 EBAG9O00559 213 aa4.92□□□□□ -1.62
LINC00560-201ENST00000564593 CNOT3O75175 753 aaKnown RBP4.92□□□□□ -1.62
LINC00560-201ENST00000564593 PCNAP12004 261 aa4.92□□□□□ -1.62
LINC00560-201ENST00000564593 CTPS1P17812 591 aa4.92□□□□□ -1.62
LINC00560-201ENST00000564593 PBX3P40426 434 aa4.92□□□□□ -1.62
LINC00560-201ENST00000564593 CLCN5P51795 746 aa4.92□□□□□ -1.62
LINC00560-201ENST00000564593 HNRNPA0Q13151 305 aaKnown RBP4.92□□□□□ -1.62
LINC00560-201ENST00000564593 MTX1Q13505 466 aa4.92□□□□□ -1.62
LINC00560-201ENST00000564593 RNPS1Q15287 305 aaKnown RBP4.92□□□□□ -1.62
LINC00560-201ENST00000564593 TRIP6Q15654 476 aaKnown RBP4.92□□□□□ -1.62
LINC00560-201ENST00000564593 SRSF7Q16629 238 aaKnown RBP eCLIP4.92□□□□□ -1.62
LINC00560-201ENST00000564593 NCAPH2Q6IBW4 605 aa4.92□□□□□ -1.62
LINC00560-201ENST00000564593 CCDC129Q6ZRS4 1044 aa4.92□□□□□ -1.62
LINC00560-201ENST00000564593 IKBIPQ70UQ0 350 aa4.92□□□□□ -1.62
LINC00560-201ENST00000564593 GPSM1Q86YR5 675 aa4.92□□□□□ -1.62
LINC00560-201ENST00000564593 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.92□□□□□ -1.62
LINC00560-201ENST00000564593 KDM1BQ8NB78 822 aa4.92□□□□□ -1.62
LINC00560-201ENST00000564593 CREB3L4Q8TEY5 395 aa4.92□□□□□ -1.62
LINC00560-201ENST00000564593 TMEM174Q8WUU8 243 aa4.92□□□□□ -1.62
LINC00560-201ENST00000564593 RNF183Q96D59 192 aa4.92□□□□□ -1.62
LINC00560-201ENST00000564593 MSI2Q96DH6 328 aaKnown RBP4.92□□□□□ -1.62
LINC00560-201ENST00000564593 BBS4Q96RK4 519 aa4.92□□□□□ -1.62
LINC00560-201ENST00000564593 LHPPQ9H008 270 aa4.92□□□□□ -1.62
LINC00560-201ENST00000564593 HAUS2Q9NVX0 235 aa4.92□□□□□ -1.62
LINC00560-201ENST00000564593 INTS6Q9UL03 887 aaKnown RBP4.92□□□□□ -1.62
LINC00560-201ENST00000564593 MKLN1Q9UL63 735 aa4.92□□□□□ -1.62
LINC00560-201ENST00000564593 COG5Q9UP83 839 aa4.92□□□□□ -1.62
LINC00560-201ENST00000564593 GPR34Q9UPC5 381 aa4.92□□□□□ -1.62
LINC00560-201ENST00000564593 CARD8Q9Y2G2 431 aa4.92□□□□□ -1.62
LINC00560-201ENST00000564593 FAM96BQ9Y3D0 163 aa4.92□□□□□ -1.62
LINC00560-201ENST00000564593 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.92□□□□□ -1.62
LINC00560-201ENST00000564593 CAPN7Q9Y6W3 813 aa4.92□□□□□ -1.62
LINC00560-201ENST00000564593 ZMYM2Q9UBW7 1377 aa4.92□□□□□ -1.62
LINC00560-201ENST00000564593 FAM237BA0A1B0GVD1 139 aa4.91□□□□□ -1.62
LINC00560-201ENST00000564593 CGB1A6NKQ9 187 aa4.91□□□□□ -1.62
LINC00560-201ENST00000564593 ZNF814B7Z6K7 855 aa4.91□□□□□ -1.62
LINC00560-201ENST00000564593 STMND1H3BQB6 276 aa4.91□□□□□ -1.62
LINC00560-201ENST00000564593 K7ENM7 598 aa4.91□□□□□ -1.62
LINC00560-201ENST00000564593 IFNL4K9M1U5 179 aa4.91□□□□□ -1.62
LINC00560-201ENST00000564593 GTPBP1O00178 669 aaKnown RBP4.91□□□□□ -1.62
LINC00560-201ENST00000564593 MASP2O00187 686 aa4.91□□□□□ -1.62
LINC00560-201ENST00000564593 TFP02787 698 aa4.91□□□□□ -1.62
LINC00560-201ENST00000564593 MYZAPP0CAP1 466 aa4.91□□□□□ -1.62
LINC00560-201ENST00000564593 TTKP33981 857 aa4.91□□□□□ -1.62
LINC00560-201ENST00000564593 RYKP34925 604 aa4.91□□□□□ -1.62
LINC00560-201ENST00000564593 GABRB2P47870 512 aa4.91□□□□□ -1.62
LINC00560-201ENST00000564593 CLDN2P57739 230 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms