RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 MAPKAPK2P49137 400 aa17.12■□□□□ 0.33
CLN3-211ENST00000564091 KLK7P49862 253 aa17.12■□□□□ 0.33
CLN3-211ENST00000564091 NRG1Q02297 640 aaPredicted RBP17.12■□□□□ 0.33
CLN3-211ENST00000564091 C1orf61Q13536 156 aa17.12■□□□□ 0.33
CLN3-211ENST00000564091 POLD3Q15054 466 aaPredicted RBP17.12■□□□□ 0.33
CLN3-211ENST00000564091 ISXQ2M1V0 245 aa17.12■□□□□ 0.33
CLN3-211ENST00000564091 PCSK4Q6UW60 755 aa17.12■□□□□ 0.33
CLN3-211ENST00000564091 CCDC185Q8N715 623 aa17.12■□□□□ 0.33
CLN3-211ENST00000564091 OR2AP1Q8NGE2 309 aa17.12■□□□□ 0.33
CLN3-211ENST00000564091 RAB7BQ96AH8 199 aa17.12■□□□□ 0.33
CLN3-211ENST00000564091 KLHL32Q96NJ5 620 aa17.12■□□□□ 0.33
CLN3-211ENST00000564091 C11orf70Q9BRQ4 267 aa17.12■□□□□ 0.33
CLN3-211ENST00000564091 TMEM248Q9NWD8 314 aa17.12■□□□□ 0.33
CLN3-211ENST00000564091 TAB2Q9NYJ8 693 aa17.12■□□□□ 0.33
CLN3-211ENST00000564091 PNMA8BQ9ULN7 279 aaPredicted RBP17.12■□□□□ 0.33
CLN3-211ENST00000564091 NEU3Q9UQ49 428 aa17.12■□□□□ 0.33
CLN3-211ENST00000564091 ZNF462Q96JM2 2506 aa17.12■□□□□ 0.33
CLN3-211ENST00000564091 DOCK9Q9BZ29 2069 aa17.11■□□□□ 0.33
CLN3-211ENST00000564091 C2CD4BA6NLJ0 364 aa17.11■□□□□ 0.33
CLN3-211ENST00000564091 RAMP2O60895 175 aa17.11■□□□□ 0.33
CLN3-211ENST00000564091 GCATO75600 419 aa17.11■□□□□ 0.33
CLN3-211ENST00000564091 DXOO77932 396 aaKnown RBP17.11■□□□□ 0.33
CLN3-211ENST00000564091 POP4O95707 220 aaKnown RBP17.11■□□□□ 0.33
CLN3-211ENST00000564091 GSRP00390 522 aa17.11■□□□□ 0.33
CLN3-211ENST00000564091 CYP1A1P04798 512 aaPredicted RBP17.11■□□□□ 0.33
CLN3-211ENST00000564091 PLEKP08567 350 aaPredicted RBP17.11■□□□□ 0.33
CLN3-211ENST00000564091 SNRPD1P62314 119 aaKnown RBP17.11■□□□□ 0.33
CLN3-211ENST00000564091 FMO1Q01740 532 aa17.11■□□□□ 0.33
CLN3-211ENST00000564091 TCP11X2Q5H9J9 407 aa17.11■□□□□ 0.33
CLN3-211ENST00000564091 TTC7BQ86TV6 843 aa17.11■□□□□ 0.33
CLN3-211ENST00000564091 VPS36Q86VN1 386 aa17.11■□□□□ 0.33
CLN3-211ENST00000564091 ZSCAN30Q86W11 494 aa17.11■□□□□ 0.33
CLN3-211ENST00000564091 ZNF843Q8N446 348 aa17.11■□□□□ 0.33
CLN3-211ENST00000564091 LSM14AQ8ND56 463 aaKnown RBP17.11■□□□□ 0.33
CLN3-211ENST00000564091 ASB12Q8WXK4 309 aa17.11■□□□□ 0.33
CLN3-211ENST00000564091 CENPTQ96BT3 561 aa17.11■□□□□ 0.33
CLN3-211ENST00000564091 TBC1D31Q96DN5 1066 aa17.11■□□□□ 0.33
CLN3-211ENST00000564091 ATXN7L3BQ96GX2 97 aa17.11■□□□□ 0.33
CLN3-211ENST00000564091 IL12RB2Q99665 862 aa17.11■□□□□ 0.33
CLN3-211ENST00000564091 MAGEH1Q9H213 219 aa17.11■□□□□ 0.33
CLN3-211ENST00000564091 GANQ9H2C0 597 aa17.11■□□□□ 0.33
CLN3-211ENST00000564091 CPNE5Q9HCH3 593 aa17.11■□□□□ 0.33
CLN3-211ENST00000564091 ASCL3Q9NQ33 180 aa17.11■□□□□ 0.33
CLN3-211ENST00000564091 SALL4Q9UJQ4 1053 aa17.11■□□□□ 0.33
CLN3-211ENST00000564091 HPCAL4Q9UM19 191 aa17.11■□□□□ 0.33
CLN3-211ENST00000564091 CXorf51AA0A1B0GTR3 108 aa17.1■□□□□ 0.33
CLN3-211ENST00000564091 EME2A4GXA9 379 aaPredicted RBP17.1■□□□□ 0.33
CLN3-211ENST00000564091 AREL1O15033 823 aa17.1■□□□□ 0.33
CLN3-211ENST00000564091 MUSKO15146 869 aa17.1■□□□□ 0.33
CLN3-211ENST00000564091 BUB1O43683 1085 aa17.1■□□□□ 0.33
CLN3-211ENST00000564091 MMP20O60882 483 aa17.1■□□□□ 0.33
CLN3-211ENST00000564091 IGFALSP35858 605 aa17.1■□□□□ 0.33
CLN3-211ENST00000564091 ADKP55263 362 aaKnown RBP17.1■□□□□ 0.33
CLN3-211ENST00000564091 HDAC4P56524 1084 aa17.1■□□□□ 0.33
CLN3-211ENST00000564091 GEMIN4P57678 1058 aaKnown RBP17.1■□□□□ 0.33
CLN3-211ENST00000564091 ERVPABLB-1P60509 514 aa17.1■□□□□ 0.33
CLN3-211ENST00000564091 CDR2Q01850 454 aa17.1■□□□□ 0.33
CLN3-211ENST00000564091 NR0B2Q15466 257 aa17.1■□□□□ 0.33
CLN3-211ENST00000564091 PRRT3Q5FWE3 981 aa17.1■□□□□ 0.33
CLN3-211ENST00000564091 C3orf38Q5JPI3 329 aa17.1■□□□□ 0.33
CLN3-211ENST00000564091 ARHGAP40Q5TG30 622 aa17.1■□□□□ 0.33
CLN3-211ENST00000564091 GDPD4Q6W3E5 623 aa17.1■□□□□ 0.33
CLN3-211ENST00000564091 ZNF677Q86XU0 584 aa17.1■□□□□ 0.33
CLN3-211ENST00000564091 ZNF354CQ86Y25 554 aa17.1■□□□□ 0.33
CLN3-211ENST00000564091 DENND6BQ8NEG7 585 aa17.1■□□□□ 0.33
CLN3-211ENST00000564091 VCPIP1Q96JH7 1222 aa17.1■□□□□ 0.33
CLN3-211ENST00000564091 PCDHB18PQ96TA0 734 aa17.1■□□□□ 0.33
CLN3-211ENST00000564091 MBNL1Q9NR56 388 aaKnown RBP17.1■□□□□ 0.33
CLN3-211ENST00000564091 SPASTQ9UBP0 616 aa17.1■□□□□ 0.33
CLN3-211ENST00000564091 APOBEC3BQ9UH17 382 aaKnown RBP17.1■□□□□ 0.33
CLN3-211ENST00000564091 DACH1Q9UI36 760 aa17.1■□□□□ 0.33
CLN3-211ENST00000564091 SATB2Q9UPW6 733 aa17.1■□□□□ 0.33
CLN3-211ENST00000564091 PMS2P1A4D2B8 440 aa17.09■□□□□ 0.33
CLN3-211ENST00000564091 TPP1O14773 563 aa17.09■□□□□ 0.33
CLN3-211ENST00000564091 EPHB6O15197 1021 aa17.09■□□□□ 0.33
CLN3-211ENST00000564091 KLK10O43240 276 aa17.09■□□□□ 0.33
CLN3-211ENST00000564091 KDELR3O43731 214 aa17.09■□□□□ 0.33
CLN3-211ENST00000564091 TMCC1O94876 653 aa17.09■□□□□ 0.33
CLN3-211ENST00000564091 EEF1GP26641 437 aaKnown RBP17.09■□□□□ 0.33
CLN3-211ENST00000564091 PTPN9P43378 593 aa17.09■□□□□ 0.33
CLN3-211ENST00000564091 THOP1P52888 689 aa17.09■□□□□ 0.33
CLN3-211ENST00000564091 POLR2FP61218 127 aaKnown RBP17.09■□□□□ 0.33
CLN3-211ENST00000564091 PERM1Q5SV97 790 aa17.09■□□□□ 0.33
CLN3-211ENST00000564091 STRADAQ7RTN6 431 aa17.09■□□□□ 0.33
CLN3-211ENST00000564091 PHACTR4Q8IZ21 702 aa17.09■□□□□ 0.33
CLN3-211ENST00000564091 FAM172AQ8WUF8 416 aa17.09■□□□□ 0.33
CLN3-211ENST00000564091 BTN2A2Q8WVV5 523 aa17.09■□□□□ 0.33
CLN3-211ENST00000564091 KCNE4Q8WWG9 221 aa17.09■□□□□ 0.33
CLN3-211ENST00000564091 CENPIQ92674 756 aaPredicted RBP17.09■□□□□ 0.33
CLN3-211ENST00000564091 LRRC61Q9BV99 259 aa17.09■□□□□ 0.33
CLN3-211ENST00000564091 OSBPL1AQ9BXW6 950 aa17.09■□□□□ 0.33
CLN3-211ENST00000564091 KLC2Q9H0B6 622 aa17.09■□□□□ 0.33
CLN3-211ENST00000564091 VPS16Q9H269 839 aa17.09■□□□□ 0.33
CLN3-211ENST00000564091 RETREG1Q9H6L5 497 aa17.09■□□□□ 0.33
CLN3-211ENST00000564091 NLRC4Q9NPP4 1024 aa17.09■□□□□ 0.33
CLN3-211ENST00000564091 THSD1Q9NS62 852 aa17.09■□□□□ 0.33
CLN3-211ENST00000564091 FAM207AQ9NSI2 230 aaPredicted RBP17.09■□□□□ 0.33
CLN3-211ENST00000564091 NCKIPSDQ9NZQ3 722 aa17.09■□□□□ 0.33
CLN3-211ENST00000564091 ATMQ13315 3056 aa17.08■□□□□ 0.33
CLN3-211ENST00000564091 SETXQ7Z333 2677 aaKnown RBP17.08■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms