RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 CD248Q9HCU0 757 aa16.79■□□□□ 0.28
VPS4A-202ENST00000562754 HAUS2Q9NVX0 235 aa16.79■□□□□ 0.28
VPS4A-202ENST00000562754 POLR3BQ9NW08 1133 aaPredicted RBP16.79■□□□□ 0.28
VPS4A-202ENST00000562754 DMGDHQ9UI17 866 aaKnown RBP16.79■□□□□ 0.28
VPS4A-202ENST00000562754 WASF2Q9Y6W5 498 aa16.79■□□□□ 0.28
VPS4A-202ENST00000562754 TARSL2A2RTX5 802 aaKnown RBP16.78■□□□□ 0.28
VPS4A-202ENST00000562754 EFCAB8A8MWE9 144 aa16.78■□□□□ 0.28
VPS4A-202ENST00000562754 PIGNO95427 931 aa16.78■□□□□ 0.28
VPS4A-202ENST00000562754 CTSLP07711 333 aa16.78■□□□□ 0.28
VPS4A-202ENST00000562754 RHOXF2BP0C7M4 288 aa16.78■□□□□ 0.28
VPS4A-202ENST00000562754 HOXB2P14652 356 aa16.78■□□□□ 0.28
VPS4A-202ENST00000562754 ADCY8P40145 1251 aa16.78■□□□□ 0.28
VPS4A-202ENST00000562754 RECQLP46063 649 aaPredicted RBP16.78■□□□□ 0.28
VPS4A-202ENST00000562754 TERF1P54274 439 aa16.78■□□□□ 0.28
VPS4A-202ENST00000562754 BASP1P80723 227 aaKnown RBP16.78■□□□□ 0.28
VPS4A-202ENST00000562754 TRAF2Q12933 501 aa16.78■□□□□ 0.28
VPS4A-202ENST00000562754 SLC14A2Q15849 920 aa16.78■□□□□ 0.28
VPS4A-202ENST00000562754 HSF5Q4G112 596 aaPredicted RBP16.78■□□□□ 0.28
VPS4A-202ENST00000562754 GLE1Q53GS7 698 aaKnown RBP16.78■□□□□ 0.28
VPS4A-202ENST00000562754 RALGPS1Q5JS13 557 aa16.78■□□□□ 0.28
VPS4A-202ENST00000562754 SYCP2LQ5T4T6 812 aa16.78■□□□□ 0.28
VPS4A-202ENST00000562754 KCTD11Q693B1 232 aa16.78■□□□□ 0.28
VPS4A-202ENST00000562754 KIAA1211LQ6NV74 962 aa16.78■□□□□ 0.28
VPS4A-202ENST00000562754 TRIM67Q6ZTA4 783 aa16.78■□□□□ 0.28
VPS4A-202ENST00000562754 SYNPOQ8N3V7 929 aa16.78■□□□□ 0.28
VPS4A-202ENST00000562754 GRIN3AQ8TCU5 1115 aa16.78■□□□□ 0.28
VPS4A-202ENST00000562754 CPT1BQ92523 772 aa16.78■□□□□ 0.28
VPS4A-202ENST00000562754 CLDN23Q96B33 292 aa16.78■□□□□ 0.28
VPS4A-202ENST00000562754 FAM129BQ96TA1 746 aa16.78■□□□□ 0.28
VPS4A-202ENST00000562754 HINFPQ9BQA5 517 aa16.78■□□□□ 0.28
VPS4A-202ENST00000562754 RHOXF2Q9BQY4 288 aa16.78■□□□□ 0.28
VPS4A-202ENST00000562754 OSBPL6Q9BZF3 934 aa16.78■□□□□ 0.28
VPS4A-202ENST00000562754 ZDHHC6Q9H6R6 413 aa16.78■□□□□ 0.28
VPS4A-202ENST00000562754 SUN2Q9UH99 717 aa16.78■□□□□ 0.28
VPS4A-202ENST00000562754 MMP17Q9ULZ9 603 aa16.78■□□□□ 0.28
VPS4A-202ENST00000562754 SNX24Q9Y343 169 aa16.78■□□□□ 0.28
VPS4A-202ENST00000562754 A0A1W2PQF6 199 aa16.77■□□□□ 0.28
VPS4A-202ENST00000562754 TCRBV7S3A2A0A539 114 aa16.77■□□□□ 0.28
VPS4A-202ENST00000562754 ESYT3A0FGR9 886 aa16.77■□□□□ 0.28
VPS4A-202ENST00000562754 CHURC1-FNTBB4DL54 471 aa16.77■□□□□ 0.28
VPS4A-202ENST00000562754 DNALI1O14645 258 aaPredicted RBP16.77■□□□□ 0.28
VPS4A-202ENST00000562754 PMPCBO75439 489 aa16.77■□□□□ 0.28
VPS4A-202ENST00000562754 ANXA9O76027 345 aa16.77■□□□□ 0.28
VPS4A-202ENST00000562754 POP4O95707 220 aaKnown RBP16.77■□□□□ 0.28
VPS4A-202ENST00000562754 SERPINF2P08697 491 aa16.77■□□□□ 0.28
VPS4A-202ENST00000562754 CES1P23141 567 aa16.77■□□□□ 0.28
VPS4A-202ENST00000562754 MAGEA6P43360 314 aa16.77■□□□□ 0.28
VPS4A-202ENST00000562754 MAPK8P45983 427 aa16.77■□□□□ 0.28
VPS4A-202ENST00000562754 GEMP55040 296 aa16.77■□□□□ 0.28
VPS4A-202ENST00000562754 OLIG2Q13516 323 aa16.77■□□□□ 0.28
VPS4A-202ENST00000562754 ELAVL3Q14576 367 aaKnown RBP16.77■□□□□ 0.28
VPS4A-202ENST00000562754 KCNJ11Q14654 390 aa16.77■□□□□ 0.28
VPS4A-202ENST00000562754 TRADDQ15628 312 aa16.77■□□□□ 0.28
VPS4A-202ENST00000562754 RNASEH2BQ5TBB1 312 aaKnown RBP16.77■□□□□ 0.28
VPS4A-202ENST00000562754 ANKRD22Q5VYY1 191 aa16.77■□□□□ 0.28
VPS4A-202ENST00000562754 IZUMO3Q5VZ72 239 aa16.77■□□□□ 0.28
VPS4A-202ENST00000562754 OR8D1Q8WZ84 308 aa16.77■□□□□ 0.28
VPS4A-202ENST00000562754 LRRC45Q96CN5 670 aa16.77■□□□□ 0.28
VPS4A-202ENST00000562754 SNF8Q96H20 258 aa16.77■□□□□ 0.28
VPS4A-202ENST00000562754 MRGPRX2Q96LB1 330 aa16.77■□□□□ 0.28
VPS4A-202ENST00000562754 HEPHQ9BQS7 1158 aa16.77■□□□□ 0.28
VPS4A-202ENST00000562754 RAB17Q9H0T7 212 aa16.77■□□□□ 0.28
VPS4A-202ENST00000562754 C2orf42Q9NWW7 574 aa16.77■□□□□ 0.28
VPS4A-202ENST00000562754 GRHL1Q9NZI5 618 aa16.77■□□□□ 0.28
VPS4A-202ENST00000562754 FAM153AQ9UHL3 310 aa16.77■□□□□ 0.28
VPS4A-202ENST00000562754 FARP1Q9Y4F1 1045 aaPredicted RBP16.77■□□□□ 0.28
VPS4A-202ENST00000562754 ALOX15BO15296 676 aa16.76■□□□□ 0.27
VPS4A-202ENST00000562754 TP73O15350 636 aa16.76■□□□□ 0.27
VPS4A-202ENST00000562754 TMEM63AO94886 807 aa16.76■□□□□ 0.27
VPS4A-202ENST00000562754 SEC31AO94979 1220 aaKnown RBP16.76■□□□□ 0.27
VPS4A-202ENST00000562754 WNT3AP56704 352 aa16.76■□□□□ 0.27
VPS4A-202ENST00000562754 GUCY2DQ02846 1103 aa16.76■□□□□ 0.27
VPS4A-202ENST00000562754 MPP3Q13368 585 aa16.76■□□□□ 0.27
VPS4A-202ENST00000562754 SPARCL1Q14515 664 aa16.76■□□□□ 0.27
VPS4A-202ENST00000562754 PRPSAP1Q14558 356 aa16.76■□□□□ 0.27
VPS4A-202ENST00000562754 PCSK7Q16549 785 aa16.76■□□□□ 0.27
VPS4A-202ENST00000562754 EOGTQ5NDL2 527 aa16.76■□□□□ 0.27
VPS4A-202ENST00000562754 SDE2Q6IQ49 451 aa16.76■□□□□ 0.27
VPS4A-202ENST00000562754 TMEM92Q6UXU6 159 aa16.76■□□□□ 0.27
VPS4A-202ENST00000562754 CAMK1DQ8IU85 385 aa16.76■□□□□ 0.27
VPS4A-202ENST00000562754 PDCD7Q8N8D1 485 aaKnown RBP16.76■□□□□ 0.27
VPS4A-202ENST00000562754 FLCNQ8NFG4 579 aa16.76■□□□□ 0.27
VPS4A-202ENST00000562754 IPMKQ8NFU5 416 aa16.76■□□□□ 0.27
VPS4A-202ENST00000562754 SEC14L1Q92503 715 aa16.76■□□□□ 0.27
VPS4A-202ENST00000562754 TUBGCP5Q96RT8 1024 aa16.76■□□□□ 0.27
VPS4A-202ENST00000562754 TDRD1Q9BXT4 1180 aaKnown RBP16.76■□□□□ 0.27
VPS4A-202ENST00000562754 CPEB1Q9BZB8 566 aaKnown RBP16.76■□□□□ 0.27
VPS4A-202ENST00000562754 EPC1Q9H2F5 836 aa16.76■□□□□ 0.27
VPS4A-202ENST00000562754 CHRDQ9H2X0 955 aa16.76■□□□□ 0.27
VPS4A-202ENST00000562754 EIF2B3Q9NR50 452 aaKnown RBP16.76■□□□□ 0.27
VPS4A-202ENST00000562754 VPS45Q9NRW7 570 aa16.76■□□□□ 0.27
VPS4A-202ENST00000562754 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.76■□□□□ 0.27
VPS4A-202ENST00000562754 IL36AQ9UHA7 158 aa16.76■□□□□ 0.27
VPS4A-202ENST00000562754 UTP11Q9Y3A2 253 aaKnown RBP16.76■□□□□ 0.27
VPS4A-202ENST00000562754 PCDHGC4Q9Y5F7 938 aa16.76■□□□□ 0.27
VPS4A-202ENST00000562754 RAI2Q9Y5P3 530 aa16.76■□□□□ 0.27
VPS4A-202ENST00000562754 V9GYY5 206 aaPredicted RBP16.76■□□□□ 0.27
VPS4A-202ENST00000562754 TRIOO75962 3097 aa16.76■□□□□ 0.27
VPS4A-202ENST00000562754 MYLKQ15746 1914 aa16.75■□□□□ 0.27
VPS4A-202ENST00000562754 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms