RNA–Protein interactions for RNA: ENST00000562298.1

VPS9D1-AS1-201, VPS9D1 antisense RNA 1, humanhuman

TSL 1 (best)

Gene VPS9D1-AS1, Length 931 nt, Biotype antisense RNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-AS1-201ENST00000562298 ATXN7L2Q5T6C5 722 aaPredicted RBP16.95■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 CDKAL1Q5VV42 579 aa16.95■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 ZCCHC8Q6NZY4 707 aaKnown RBP16.95■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 ASB12Q8WXK4 309 aa16.95■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 TBC1D31Q96DN5 1066 aa16.95■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 KLHL32Q96NJ5 620 aa16.95■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 DEPDC7Q96QD5 511 aa16.95■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 PCDHB18PQ96TA0 734 aa16.95■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 NLRC4Q9NPP4 1024 aa16.95■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 PNMA8BQ9ULN7 279 aaPredicted RBP16.95■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 CSNK1G3Q9Y6M4 447 aa16.95■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 SHROOM3Q8TF72 1996 aa16.95■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 NEMP1O14524 444 aa16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 AREL1O15033 823 aa16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 ATXN7O15265 892 aaPredicted RBP16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 AQP9O43315 295 aa16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 KDELR3O43731 214 aa16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 LZTS3O60299 673 aaPredicted RBP16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 USP12O75317 370 aa16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 C1QL1O75973 258 aa16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 JUNDP17535 347 aa16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 TGM2P21980 687 aa16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 RFC1P35251 1148 aaPredicted RBP16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 DUSP3P51452 185 aaPredicted RBP16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 GSCP56915 257 aaPredicted RBP16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 SNRPD1P62314 119 aaKnown RBP16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 GABREP78334 506 aa16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 POLD3Q15054 466 aaPredicted RBP16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 KRT31Q15323 416 aa16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 CDKN3Q16667 212 aa16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 DEFB133Q30KQ1 61 aa16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 MYLK3Q32MK0 819 aa16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 CT47A1Q5JQC4 288 aaPredicted RBP16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 GUSBP11Q6P575 273 aa16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 RBFAQ8N0V3 343 aa16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 PYROXD2Q8N2H3 581 aa16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 DENND6BQ8NEG7 585 aa16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 ENOX1Q8TC92 643 aaKnown RBP16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 SLC39A7Q92504 469 aa16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 NTAN1Q96AB6 310 aa16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 CENPTQ96BT3 561 aa16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 HIC2Q96JB3 615 aa16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 OSBPL1AQ9BXW6 950 aa16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 NOL6Q9H6R4 1146 aaKnown RBP16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 IPO11Q9UI26 975 aaKnown RBP16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 HPCAL4Q9UM19 191 aa16.94■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 CFAP46Q8IYW2 2715 aa16.93■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 DXOO77932 396 aaKnown RBP16.93■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 TMCC1O94876 653 aa16.93■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 POP4O95707 220 aaKnown RBP16.93■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 KRT3P12035 628 aa16.93■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 ITIH2P19823 946 aa16.93■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 IGFALSP35858 605 aa16.93■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 GDPD4Q6W3E5 623 aa16.93■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 TRIM72Q6ZMU5 477 aa16.93■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 NETO2Q8NC67 525 aa16.93■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 ZNF248Q8NDW4 579 aa16.93■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 MAPK15Q8TD08 544 aa16.93■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 LMX1AQ8TE12 382 aa16.93■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 ZNF578Q96N58 590 aaPredicted RBP16.93■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 KLC2Q9H0B6 622 aa16.93■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 ABCG4Q9H172 646 aa16.93■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 TCEAL2Q9H3H9 227 aaPredicted RBP16.93■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 EVA1BQ9NVM1 165 aa16.93■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 SIK3Q9Y2K2 1263 aa16.93■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 A0A1W2PNU3 283 aaPredicted RBP16.92■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 TK2O00142 265 aa16.92■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 BUB1O43683 1085 aa16.92■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 GCATO75600 419 aa16.92■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 GPD1P21695 349 aa16.92■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 LSSP48449 732 aa16.92■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 PCBP4P57723 403 aaKnown RBP16.92■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 CXADRP78310 365 aa16.92■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 ISXQ2M1V0 245 aa16.92■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 WDR59Q6PJI9 974 aa16.92■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 EFL1Q7Z2Z2 1120 aaKnown RBP16.92■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 GPR155Q7Z3F1 870 aa16.92■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 TTC7BQ86TV6 843 aa16.92■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 VPS36Q86VN1 386 aa16.92■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 RTL3Q8N8U3 475 aaKnown RBP16.92■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 ARHGEF26Q96DR7 871 aa16.92■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 NAF1Q96HR8 494 aaKnown RBP16.92■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 LGMNQ99538 433 aa16.92■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 SELENOOQ9BVL4 669 aa16.92■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 BOCQ9BWV1 1114 aa16.92■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 TTYH3Q9C0H2 523 aa16.92■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 POLR1BQ9H9Y6 1135 aa16.92■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 ASCL3Q9NQ33 180 aa16.92■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 ADAM22Q9P0K1 906 aa16.92■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 APOBEC3BQ9UH17 382 aaKnown RBP16.92■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 SALL4Q9UJQ4 1053 aa16.92■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 PTPRQQ9UMZ3 2332 aa16.91■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 TCRBV5S1A1TA0A578 114 aa16.91■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 CPED1A4D0V7 1026 aa16.91■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 EME2A4GXA9 379 aaPredicted RBP16.91■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 TPP1O14773 563 aa16.91■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 CASC3O15234 703 aaKnown RBP16.91■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 MMP20O60882 483 aa16.91■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 EPHB2P29323 1055 aa16.91■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 STAT1P42224 750 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms