RNA–Protein interactions for RNA: ENST00000560715.5

TSPAN3-209, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 2,892 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-209ENST00000560715 RING1Q06587 406 aa6.85□□□□□ -1.31
TSPAN3-209ENST00000560715 SLBPQ14493 270 aaKnown RBP eCLIP6.85□□□□□ -1.31
TSPAN3-209ENST00000560715 TDRD12Q587J7 1177 aaKnown RBP6.85□□□□□ -1.31
TSPAN3-209ENST00000560715 RAP1GAP2Q684P5 730 aa6.85□□□□□ -1.31
TSPAN3-209ENST00000560715 TUBA1AQ71U36 451 aa6.85□□□□□ -1.31
TSPAN3-209ENST00000560715 ANO5Q75V66 913 aa6.85□□□□□ -1.31
TSPAN3-209ENST00000560715 ALLCQ8N6M5 410 aa6.85□□□□□ -1.31
TSPAN3-209ENST00000560715 GLB1L3Q8NCI6 653 aaPredicted RBP6.85□□□□□ -1.31
TSPAN3-209ENST00000560715 SYN2Q92777 582 aaPredicted RBP6.85□□□□□ -1.31
TSPAN3-209ENST00000560715 APOPT1Q96IL0 206 aa6.85□□□□□ -1.31
TSPAN3-209ENST00000560715 CEP295NLQ96MC4 621 aa6.85□□□□□ -1.31
TSPAN3-209ENST00000560715 PDCD2LQ9BRP1 358 aa6.85□□□□□ -1.31
TSPAN3-209ENST00000560715 PRDM8Q9NQV8 689 aa6.85□□□□□ -1.31
TSPAN3-209ENST00000560715 MTRF1LQ9UGC7 380 aaKnown RBP6.85□□□□□ -1.31
TSPAN3-209ENST00000560715 MTUS1Q9ULD2 1270 aa6.85□□□□□ -1.31
TSPAN3-209ENST00000560715 SBF2Q86WG5 1849 aa6.85□□□□□ -1.31
TSPAN3-209ENST00000560715 ZNF213O14771 459 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 TBC1D4O60343 1298 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 CNOT3O75175 753 aaKnown RBP6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 ENTPD3O75355 529 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 PCDH8O95206 1070 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 MPOP05164 745 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 OCM2P0CE71 109 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 OCMP0CE72 109 aaPredicted RBP6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 SCG2P13521 617 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 GNA11P29992 359 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 GUCY1A2P33402 732 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 ARL3P36405 182 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 RPP30P78346 268 aaKnown RBP6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 GPLD1P80108 840 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 FGL2Q14314 439 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 NR1D2Q14995 579 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 ACAP1Q15027 740 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 SLC18A3Q16572 532 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 KYNUQ16719 465 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 ANKRD20A4Q4UJ75 823 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 KIAA1755Q5JYT7 1200 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 DCDC5Q6ZRR9 648 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 KRT74Q7RTS7 529 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 SCYL3Q8IZE3 742 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 PPP1R13LQ8WUF5 828 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 EME1Q96AY2 570 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 MRPS26Q9BYN8 205 aaKnown RBP6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 OSBPL6Q9BZF3 934 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 CDIP1Q9H305 208 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 MMRN2Q9H8L6 949 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 PIH1D3Q9NQM4 214 aaKnown RBP6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 SRRDQ9UH36 339 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 PFASO15067 1338 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 C15orf38-AP3S2A0A0A6YYH1 394 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 TMEM114B3SHH9 223 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 F5H0A9 414 aaPredicted RBP6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 ADCY6O43306 1168 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 MTRF1O75570 445 aaKnown RBP6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 FAM155BO75949 473 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 DLDP09622 509 aaKnown RBP6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 IFNAR1P17181 557 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 CST5P28325 142 aaPredicted RBP6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 BCL6P41182 706 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 VCPP55072 806 aaKnown RBP6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 KCNQ4P56696 695 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 C16orf72Q14CZ0 275 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 ARHGEF6Q15052 776 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 RNFT1Q5M7Z0 435 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 PRAMEF14Q5SWL7 426 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 SPOPLQ6IQ16 392 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 NIPAL1Q6NVV3 410 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 NLRP9Q7RTR0 991 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 ARPINQ7Z6K5 226 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 VPS36Q86VN1 386 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 TUSC5Q8IXB3 177 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 MRPL41Q8IXM3 137 aaKnown RBP6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.84□□□□□ -1.311e-7■■■□□ 17.5
TSPAN3-209ENST00000560715 METTL6Q8TCB7 284 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 SH3RF2Q8TEC5 729 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 RNF139Q8WU17 664 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 U2AF1L4Q8WU68 220 aaKnown RBP6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 THAP4Q8WY91 577 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 P2RX5Q93086 422 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 THUMPD3Q9BV44 507 aaKnown RBP6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 ABHD16BQ9H3Z7 469 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 NRIP3Q9NQ35 241 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 ADPRHL2Q9NX46 363 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 GIN1Q9NXP7 522 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 HOXC10Q9NYD6 342 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 GRHL1Q9NZI5 618 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 USP18Q9UMW8 372 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 SNX24Q9Y343 169 aa6.84□□□□□ -1.31
TSPAN3-209ENST00000560715 ZNF532Q9HCE3 1301 aa6.84□□□□□ -1.32
TSPAN3-209ENST00000560715 A0A1W2PQ67 120 aa6.83□□□□□ -1.32
TSPAN3-209ENST00000560715 TBKBP1A7MCY6 615 aa6.83□□□□□ -1.32
TSPAN3-209ENST00000560715 H0YC42 278 aa6.83□□□□□ -1.32
TSPAN3-209ENST00000560715 MAGEC1O60732 1142 aa6.83□□□□□ -1.32
TSPAN3-209ENST00000560715 EDF1O60869 148 aaKnown RBP6.83□□□□□ -1.32
TSPAN3-209ENST00000560715 IDH1O75874 414 aaKnown RBP6.83□□□□□ -1.32
TSPAN3-209ENST00000560715 FUCA1P04066 466 aa6.83□□□□□ -1.32
TSPAN3-209ENST00000560715 UBL4AP11441 157 aa6.83□□□□□ -1.32
TSPAN3-209ENST00000560715 CDH2P19022 906 aaPredicted RBP6.83□□□□□ -1.32
TSPAN3-209ENST00000560715 CCNE1P24864 410 aa6.83□□□□□ -1.32
TSPAN3-209ENST00000560715 SLC5A3P53794 718 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms