RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 TPMTP51580 245 aa12.01□□□□□ -0.49
LDLR-212ENST00000560467 KLF1Q13351 362 aaPredicted RBP12.01□□□□□ -0.49
LDLR-212ENST00000560467 DPYSQ14117 519 aa12.01□□□□□ -0.49
LDLR-212ENST00000560467 PAFAH1B3Q15102 231 aaKnown RBP12.01□□□□□ -0.49
LDLR-212ENST00000560467 CYP1B1Q16678 543 aa12.01□□□□□ -0.49
LDLR-212ENST00000560467 MPPE1Q53F39 396 aa12.01□□□□□ -0.49
LDLR-212ENST00000560467 C6orf118Q5T5N4 469 aa12.01□□□□□ -0.49
LDLR-212ENST00000560467 FYB2Q5VWT5 728 aa12.01□□□□□ -0.49
LDLR-212ENST00000560467 DRICH1Q6PGQ1 229 aaPredicted RBP12.01□□□□□ -0.49
LDLR-212ENST00000560467 C4orf22Q6V702 233 aa12.01□□□□□ -0.49
LDLR-212ENST00000560467 TMPRSS6Q8IU80 811 aa12.01□□□□□ -0.49
LDLR-212ENST00000560467 IFT20Q8IY31 132 aa12.01□□□□□ -0.49
LDLR-212ENST00000560467 PRELID2Q8N945 189 aa12.01□□□□□ -0.49
LDLR-212ENST00000560467 HJURPQ8NCD3 748 aaPredicted RBP12.01□□□□□ -0.49
LDLR-212ENST00000560467 MYRIPQ8NFW9 859 aa12.01□□□□□ -0.49
LDLR-212ENST00000560467 ACTL9Q8TC94 416 aa12.01□□□□□ -0.49
LDLR-212ENST00000560467 SETD7Q8WTS6 366 aaKnown RBP12.01□□□□□ -0.49
LDLR-212ENST00000560467 DDI1Q8WTU0 396 aa12.01□□□□□ -0.49
LDLR-212ENST00000560467 TFB1MQ8WVM0 346 aaKnown RBP12.01□□□□□ -0.49
LDLR-212ENST00000560467 SORCS1Q8WY21 1168 aa12.01□□□□□ -0.49
LDLR-212ENST00000560467 ZDHHC5Q9C0B5 715 aa12.01□□□□□ -0.49
LDLR-212ENST00000560467 DDX47Q9H0S4 455 aaKnown RBP12.01□□□□□ -0.49
LDLR-212ENST00000560467 GAREM1Q9H706 876 aa12.01□□□□□ -0.49
LDLR-212ENST00000560467 TMPRSS4Q9NRS4 437 aa12.01□□□□□ -0.49
LDLR-212ENST00000560467 THAP10Q9P2Z0 257 aaPredicted RBP12.01□□□□□ -0.49
LDLR-212ENST00000560467 PCYOX1Q9UHG3 505 aa12.01□□□□□ -0.49
LDLR-212ENST00000560467 CLEC4EQ9ULY5 219 aa12.01□□□□□ -0.49
LDLR-212ENST00000560467 HPCAL4Q9UM19 191 aa12.01□□□□□ -0.49
LDLR-212ENST00000560467 APOBEC2Q9Y235 224 aaKnown RBP12.01□□□□□ -0.49
LDLR-212ENST00000560467 SLC27A6Q9Y2P4 619 aa12.01□□□□□ -0.49
LDLR-212ENST00000560467 ADAMTS9Q9P2N4 1935 aa12.01□□□□□ -0.49
LDLR-212ENST00000560467 LOC400499M0QZD8 3231 aa12□□□□□ -0.49
LDLR-212ENST00000560467 A0A1B0GVT2 93 aa12□□□□□ -0.49
LDLR-212ENST00000560467 ARHGAP42A6NI28 874 aa12□□□□□ -0.49
LDLR-212ENST00000560467 DRGXA6NNA5 263 aa12□□□□□ -0.49
LDLR-212ENST00000560467 FAM72CH0Y354 149 aa12□□□□□ -0.49
LDLR-212ENST00000560467 BCAT2O15382 392 aaPredicted RBP12□□□□□ -0.49
LDLR-212ENST00000560467 SYNCRIPO60506 623 aaKnown RBP12□□□□□ -0.49
LDLR-212ENST00000560467 ITGAVP06756 1048 aa12□□□□□ -0.49
LDLR-212ENST00000560467 RBP3P10745 1247 aa12□□□□□ -0.49
LDLR-212ENST00000560467 PRKCHP24723 683 aa12□□□□□ -0.49
LDLR-212ENST00000560467 MAPKAPK2P49137 400 aa12□□□□□ -0.49
LDLR-212ENST00000560467 NDST2P52849 883 aa12□□□□□ -0.49
LDLR-212ENST00000560467 CDH4P55283 916 aa12□□□□□ -0.49
LDLR-212ENST00000560467 ENPP2Q13822 863 aa12□□□□□ -0.49
LDLR-212ENST00000560467 HLA-BQ31612 363 aa12□□□□□ -0.49
LDLR-212ENST00000560467 FAM72AQ5TYM5 149 aa12□□□□□ -0.49
LDLR-212ENST00000560467 PIK3R6Q5UE93 754 aa12□□□□□ -0.49
LDLR-212ENST00000560467 FAM72DQ6L9T8 149 aa12□□□□□ -0.49
LDLR-212ENST00000560467 FBXL22Q6P050 247 aa12□□□□□ -0.49
LDLR-212ENST00000560467 GLRX5Q86SX6 157 aa12□□□□□ -0.49
LDLR-212ENST00000560467 METTL3Q86U44 580 aaKnown RBP12□□□□□ -0.49
LDLR-212ENST00000560467 FAM124AQ86V42 546 aa12□□□□□ -0.49
LDLR-212ENST00000560467 ZC3H18Q86VM9 953 aaKnown RBP12□□□□□ -0.49
LDLR-212ENST00000560467 FAM72BQ86X60 149 aa12□□□□□ -0.49
LDLR-212ENST00000560467 PQLC3Q8N755 202 aa12□□□□□ -0.49
LDLR-212ENST00000560467 RTL3Q8N8U3 475 aaKnown RBP12□□□□□ -0.49
LDLR-212ENST00000560467 BBOF1Q8ND07 529 aa12□□□□□ -0.49
LDLR-212ENST00000560467 CADM4Q8NFZ8 388 aa12□□□□□ -0.49
LDLR-212ENST00000560467 HNRNPLLQ8WVV9 542 aaKnown RBP12□□□□□ -0.49
LDLR-212ENST00000560467 LRRC45Q96CN5 670 aa12□□□□□ -0.49
LDLR-212ENST00000560467 SIPA1Q96FS4 1042 aa12□□□□□ -0.49
LDLR-212ENST00000560467 ITM2CQ9NQX7 267 aa12□□□□□ -0.49
LDLR-212ENST00000560467 TM7SF3Q9NS93 570 aa12□□□□□ -0.49
LDLR-212ENST00000560467 TOR4AQ9NXH8 423 aa12□□□□□ -0.49
LDLR-212ENST00000560467 EIF2B4Q9UI10 523 aaKnown RBP12□□□□□ -0.49
LDLR-212ENST00000560467 STOML2Q9UJZ1 356 aa12□□□□□ -0.49
LDLR-212ENST00000560467 BTBD3Q9Y2F9 522 aa12□□□□□ -0.49
LDLR-212ENST00000560467 SNX10Q9Y5X0 201 aa12□□□□□ -0.49
LDLR-212ENST00000560467 IGLV3-10A0A075B6K4 115 aa11.99□□□□□ -0.49
LDLR-212ENST00000560467 TCRBV7S2A1N4TA0A589 114 aa11.99□□□□□ -0.49
LDLR-212ENST00000560467 TARSL2A2RTX5 802 aaKnown RBP11.99□□□□□ -0.49
LDLR-212ENST00000560467 GOLGA8CPA6NN73 597 aa11.99□□□□□ -0.49
LDLR-212ENST00000560467 METTL12A8MUP2 240 aa11.99□□□□□ -0.49
LDLR-212ENST00000560467 WASH4PA8MWX3 477 aa11.99□□□□□ -0.49
LDLR-212ENST00000560467 RAMP2O60895 175 aa11.99□□□□□ -0.49
LDLR-212ENST00000560467 CER1O95813 267 aa11.99□□□□□ -0.49
LDLR-212ENST00000560467 RHOXF2BP0C7M4 288 aa11.99□□□□□ -0.49
LDLR-212ENST00000560467 ATXN1LP0C7T5 689 aaKnown RBP11.99□□□□□ -0.49
LDLR-212ENST00000560467 HLA-EP13747 358 aa11.99□□□□□ -0.49
LDLR-212ENST00000560467 ADCY8P40145 1251 aa11.99□□□□□ -0.49
LDLR-212ENST00000560467 COPAP53621 1224 aa11.99□□□□□ -0.49
LDLR-212ENST00000560467 YBEYP58557 167 aaPredicted RBP11.99□□□□□ -0.49
LDLR-212ENST00000560467 AP1B1Q10567 949 aa11.99□□□□□ -0.49
LDLR-212ENST00000560467 CALCOCO2Q13137 446 aa11.99□□□□□ -0.49
LDLR-212ENST00000560467 CDH18Q13634 790 aa11.99□□□□□ -0.49
LDLR-212ENST00000560467 ZNF234Q14588 700 aa11.99□□□□□ -0.49
LDLR-212ENST00000560467 NOMO1Q15155 1222 aa11.99□□□□□ -0.49
LDLR-212ENST00000560467 PARP15Q460N3 678 aa11.99□□□□□ -0.49
LDLR-212ENST00000560467 MPP7Q5T2T1 576 aa11.99□□□□□ -0.49
LDLR-212ENST00000560467 TIGD7Q6NT04 549 aaPredicted RBP11.99□□□□□ -0.49
LDLR-212ENST00000560467 CHST9Q7L1S5 443 aa11.99□□□□□ -0.49
LDLR-212ENST00000560467 ANKS1BQ7Z6G8 1248 aa11.99□□□□□ -0.49
LDLR-212ENST00000560467 BBS5Q8N3I7 341 aa11.99□□□□□ -0.49
LDLR-212ENST00000560467 CPXM2Q8N436 756 aa11.99□□□□□ -0.49
LDLR-212ENST00000560467 ATPAF2Q8N5M1 289 aa11.99□□□□□ -0.49
LDLR-212ENST00000560467 C1orf216Q8TAB5 229 aa11.99□□□□□ -0.49
LDLR-212ENST00000560467 BAHD1Q8TBE0 780 aaPredicted RBP11.99□□□□□ -0.49
LDLR-212ENST00000560467 SNX19Q92543 992 aa11.99□□□□□ -0.49
LDLR-212ENST00000560467 PRCCQ92733 491 aaPredicted RBP11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms