RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-222ENST00000560435 DMBX1Q8NFW5 382 aa2.76□□□□□ -1.97
SPG11-222ENST00000560435 TTC14Q96N46 770 aa2.76□□□□□ -1.97
SPG11-222ENST00000560435 MVB12BQ9H7P6 319 aa2.76□□□□□ -1.97
SPG11-222ENST00000560435 LIN7CQ9NUP9 197 aaKnown RBP2.76□□□□□ -1.97
SPG11-222ENST00000560435 ABCF3Q9NUQ8 709 aa2.76□□□□□ -1.97
SPG11-222ENST00000560435 OBP2AQ9NY56 170 aa2.76□□□□□ -1.97
SPG11-222ENST00000560435 OR6C3Q9NZP0 311 aa2.76□□□□□ -1.97
SPG11-222ENST00000560435 TAAR2Q9P1P5 351 aa2.76□□□□□ -1.97
SPG11-222ENST00000560435 UPB1Q9UBR1 384 aa2.76□□□□□ -1.97
SPG11-222ENST00000560435 SLCO3A1Q9UIG8 710 aa2.76□□□□□ -1.97
SPG11-222ENST00000560435 PCDHA10Q9Y5I2 948 aa2.76□□□□□ -1.97
SPG11-222ENST00000560435 A0A0G2JPF8 293 aa2.75□□□□□ -1.97
SPG11-222ENST00000560435 HNRNPCL3B7ZW38 293 aa2.75□□□□□ -1.97
SPG11-222ENST00000560435 CCNT1O60563 726 aaKnown RBP2.75□□□□□ -1.97
SPG11-222ENST00000560435 HNRNPCL1O60812 293 aaKnown RBP2.75□□□□□ -1.97
SPG11-222ENST00000560435 TIPRLO75663 272 aa2.75□□□□□ -1.97
SPG11-222ENST00000560435 HNRNPCL4P0DMR1 293 aa2.75□□□□□ -1.97
SPG11-222ENST00000560435 EEF1GP26641 437 aaKnown RBP2.75□□□□□ -1.97
SPG11-222ENST00000560435 OASLQ15646 514 aaKnown RBP2.75□□□□□ -1.97
SPG11-222ENST00000560435 TBRG1Q3YBR2 411 aa2.75□□□□□ -1.97
SPG11-222ENST00000560435 TRIM60Q495X7 471 aa2.75□□□□□ -1.97
SPG11-222ENST00000560435 FAM122CQ6P4D5 195 aa2.75□□□□□ -1.97
SPG11-222ENST00000560435 GALNT7Q86SF2 657 aa2.75□□□□□ -1.97
SPG11-222ENST00000560435 SLC9B2Q86UD5 537 aa2.75□□□□□ -1.97
SPG11-222ENST00000560435 SATL1Q86VE3 508 aa2.75□□□□□ -1.97
SPG11-222ENST00000560435 SCAIQ8N9R8 606 aa2.75□□□□□ -1.97
SPG11-222ENST00000560435 CNBD1Q8NA66 436 aa2.75□□□□□ -1.97
SPG11-222ENST00000560435 ZNF248Q8NDW4 579 aa2.75□□□□□ -1.97
SPG11-222ENST00000560435 DEPTORQ8TB45 409 aa2.75□□□□□ -1.97
SPG11-222ENST00000560435 SLC2A12Q8TD20 617 aa2.75□□□□□ -1.97
SPG11-222ENST00000560435 HMGB4Q8WW32 186 aa2.75□□□□□ -1.97
SPG11-222ENST00000560435 BRI3BPQ8WY22 251 aa2.75□□□□□ -1.97
SPG11-222ENST00000560435 TANKQ92844 425 aa2.75□□□□□ -1.97
SPG11-222ENST00000560435 ZNF566Q969W8 418 aa2.75□□□□□ -1.97
SPG11-222ENST00000560435 C17orf77Q96MU5 243 aa2.75□□□□□ -1.97
SPG11-222ENST00000560435 ATOH8Q96SQ7 321 aa2.75□□□□□ -1.97
SPG11-222ENST00000560435 TP63Q9H3D4 680 aaPredicted RBP2.75□□□□□ -1.97
SPG11-222ENST00000560435 DDX21Q9NR30 783 aaKnown RBP eCLIP2.75□□□□□ -1.97
SPG11-222ENST00000560435 GRHL1Q9NZI5 618 aa2.75□□□□□ -1.97
SPG11-222ENST00000560435 SNX9Q9Y5X1 595 aa2.75□□□□□ -1.97
SPG11-222ENST00000560435 PRSS21Q9Y6M0 314 aa2.75□□□□□ -1.97
SPG11-222ENST00000560435 TNFSF12-TNFSF13A0A0A6YY99 330 aa2.74□□□□□ -1.97
SPG11-222ENST00000560435 PMS2P5A8MQ11 134 aa2.74□□□□□ -1.97
SPG11-222ENST00000560435 HEXIM1O94992 359 aaKnown RBP2.74□□□□□ -1.97
SPG11-222ENST00000560435 CSRP3P50461 194 aa2.74□□□□□ -1.97
SPG11-222ENST00000560435 DSCR10P59022 87 aa2.74□□□□□ -1.97
SPG11-222ENST00000560435 LPIN1Q14693 890 aa2.74□□□□□ -1.97
SPG11-222ENST00000560435 ZNF876PQ49A33 203 aa2.74□□□□□ -1.97
SPG11-222ENST00000560435 SPINK14Q6IE38 97 aa2.74□□□□□ -1.97
SPG11-222ENST00000560435 KRTAP5-5Q701N2 237 aaPredicted RBP2.74□□□□□ -1.97
SPG11-222ENST00000560435 DSG4Q86SJ6 1040 aa2.74□□□□□ -1.97
SPG11-222ENST00000560435 MB21D2Q8IYB1 491 aaPredicted RBP2.74□□□□□ -1.97
SPG11-222ENST00000560435 CCDC105Q8IYK2 499 aa2.74□□□□□ -1.97
SPG11-222ENST00000560435 MYO1HQ8N1T3 1032 aa2.74□□□□□ -1.97
SPG11-222ENST00000560435 METTL27Q8N6F8 245 aaPredicted RBP2.74□□□□□ -1.97
SPG11-222ENST00000560435 OR4N2Q8NGD1 307 aa2.74□□□□□ -1.97
SPG11-222ENST00000560435 KCNJ9Q92806 393 aa2.74□□□□□ -1.97
SPG11-222ENST00000560435 ATOH1Q92858 354 aaPredicted RBP2.74□□□□□ -1.97
SPG11-222ENST00000560435 TTC17Q96AE7 1141 aa2.74□□□□□ -1.97
SPG11-222ENST00000560435 TMEM19Q96HH6 336 aa2.74□□□□□ -1.97
SPG11-222ENST00000560435 C3orf30Q96M34 536 aa2.74□□□□□ -1.97
SPG11-222ENST00000560435 CSF3RQ99062 836 aa2.74□□□□□ -1.97
SPG11-222ENST00000560435 WDR6Q9NNW5 1121 aaKnown RBP2.74□□□□□ -1.97
SPG11-222ENST00000560435 FBXO40Q9UH90 709 aa2.74□□□□□ -1.97
SPG11-222ENST00000560435 FAM90A18PA6NE21 464 aa2.73□□□□□ -1.97
SPG11-222ENST00000560435 FAM90A16PA6NEW6 464 aa2.73□□□□□ -1.97
SPG11-222ENST00000560435 FAM90A9PA6NNJ1 464 aa2.73□□□□□ -1.97
SPG11-222ENST00000560435 KRTAP16-1A8MUX0 517 aa2.73□□□□□ -1.97
SPG11-222ENST00000560435 FAM90A5PA8MXJ8 464 aa2.73□□□□□ -1.97
SPG11-222ENST00000560435 DNPH1O43598 174 aa2.73□□□□□ -1.97
SPG11-222ENST00000560435 FGF18O76093 207 aa2.73□□□□□ -1.97
SPG11-222ENST00000560435 TUBBP07437 444 aa2.73□□□□□ -1.97
SPG11-222ENST00000560435 FAM90A15PP0C7V4 464 aa2.73□□□□□ -1.97
SPG11-222ENST00000560435 FAM90A14PP0C7W9 464 aa2.73□□□□□ -1.97
SPG11-222ENST00000560435 SKIV2L2P42285 1042 aaKnown RBP2.73□□□□□ -1.97
SPG11-222ENST00000560435 CDK7P50613 346 aa2.73□□□□□ -1.97
SPG11-222ENST00000560435 TUBB4BP68371 445 aa2.73□□□□□ -1.97
SPG11-222ENST00000560435 SLC20A2Q08357 652 aa2.73□□□□□ -1.97
SPG11-222ENST00000560435 CHAF1AQ13111 956 aaPredicted RBP2.73□□□□□ -1.97
SPG11-222ENST00000560435 STXBP4Q6ZWJ1 553 aa2.73□□□□□ -1.97
SPG11-222ENST00000560435 MCPH1Q8NEM0 835 aa2.73□□□□□ -1.97
SPG11-222ENST00000560435 SPATA22Q8NHS9 363 aa2.73□□□□□ -1.97
SPG11-222ENST00000560435 IPO4Q8TEX9 1081 aaKnown RBP2.73□□□□□ -1.97
SPG11-222ENST00000560435 KLHL1Q9NR64 748 aa2.73□□□□□ -1.97
SPG11-222ENST00000560435 TARSL2A2RTX5 802 aaKnown RBP2.72□□□□□ -1.97
SPG11-222ENST00000560435 FAM157AC9JC47 383 aa2.72□□□□□ -1.97
SPG11-222ENST00000560435 CAPN9O14815 690 aa2.72□□□□□ -1.97
SPG11-222ENST00000560435 MID1O15344 667 aa2.72□□□□□ -1.97
SPG11-222ENST00000560435 TSPAN6O43657 245 aa2.72□□□□□ -1.97
SPG11-222ENST00000560435 CYP4B1P13584 511 aa2.72□□□□□ -1.97
SPG11-222ENST00000560435 KRT9P35527 623 aa2.72□□□□□ -1.97
SPG11-222ENST00000560435 IL15P40933 162 aaPredicted RBP2.72□□□□□ -1.97
SPG11-222ENST00000560435 FMO5P49326 533 aa2.72□□□□□ -1.97
SPG11-222ENST00000560435 LUMP51884 338 aaPredicted RBP2.72□□□□□ -1.97
SPG11-222ENST00000560435 DRG2P55039 364 aaKnown RBP2.72□□□□□ -1.97
SPG11-222ENST00000560435 PITX1P78337 314 aaPredicted RBP2.72□□□□□ -1.97
SPG11-222ENST00000560435 IRX6P78412 446 aaPredicted RBP2.72□□□□□ -1.97
SPG11-222ENST00000560435 IFIT5Q13325 482 aaKnown RBP2.72□□□□□ -1.97
SPG11-222ENST00000560435 BTBD16Q32M84 506 aa2.72□□□□□ -1.97
SPG11-222ENST00000560435 ATP13A5Q4VNC0 1218 aa2.72□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms