RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 WDR55Q9H6Y2 383 aaPredicted RBP10.74□□□□□ -0.69
CUX1-217ENST00000558836 GKN1Q9NS71 199 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 RAMP2O60895 175 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 SLC4A1P02730 911 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 MPOP05164 745 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 RHOQP17081 205 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 FGFR3P22607 806 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 GLDCP23378 1020 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 PGM1P36871 562 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 GRIA4P48058 902 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 ARSDP51689 593 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 SLC25A3Q00325 362 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 ZNF33AQ06730 810 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 GPR17Q13304 367 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 GALNT3Q14435 633 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 IL31Q6EBC2 164 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 NEPROQ6NW34 567 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 MSANTD2Q6P1R3 559 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 KDELC1Q6UW63 502 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.74□□□□□ -0.691e-8■■■■□ 26.3
CUX1-217ENST00000558836 FAM126BQ8IXS8 530 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 LGI2Q8N0V4 545 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 PHTF2Q8N3S3 785 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 ATP6V0D2Q8N8Y2 350 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 RAB3IL1Q8TBN0 382 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 ZNF296Q8WUU4 475 aaPredicted RBP10.74□□□□□ -0.69
CUX1-217ENST00000558836 ZNF512Q96ME7 567 aaPredicted RBP10.74□□□□□ -0.69
CUX1-217ENST00000558836 FAM161BQ96MY7 647 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 THTPAQ9BU02 230 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 C1QTNF1Q9BXJ1 281 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 UNC93B1Q9H1C4 597 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 SLC25A51Q9H1U9 297 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 CHD7Q9P2D1 2997 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 GREB1Q4ZG55 1949 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 MIA3Q5JRA6 1907 aa10.74□□□□□ -0.69
CUX1-217ENST00000558836 ZNF195O14628 629 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 TRIM13O60858 407 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 SIN3BO75182 1162 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 SORBS2O94875 1100 aaKnown RBP10.73□□□□□ -0.69
CUX1-217ENST00000558836 SLC2A3P11169 496 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 SLC6A4P31645 630 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 PLK1P53350 603 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 CSE1LP55060 971 aaKnown RBP10.73□□□□□ -0.69
CUX1-217ENST00000558836 RPS24P62847 133 aaKnown RBP10.73□□□□□ -0.69
CUX1-217ENST00000558836 HNRNPDQ14103 355 aaKnown RBP10.73□□□□□ -0.69
CUX1-217ENST00000558836 KRT72Q14CN4 511 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 ACSBG2Q5FVE4 666 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 CFAP157Q5JU67 520 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 SPDYAQ5MJ70 313 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 SWT1Q5T5J6 900 aaKnown RBP10.73□□□□□ -0.69
CUX1-217ENST00000558836 WLSQ5T9L3 541 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 POTEHQ6S545 545 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 CCNYL1Q8N7R7 359 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 FBXO22Q8NEZ5 403 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 OR7D4Q8NG98 312 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 MAGEC3Q8TD91 643 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 BLOC1S5Q8TDH9 187 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 ISL2Q96A47 359 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 IMP4Q96G21 291 aaKnown RBP10.73□□□□□ -0.69
CUX1-217ENST00000558836 HHIPL1Q96JK4 782 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 DEFB118Q96PH6 123 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 CYP2S1Q96SQ9 504 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 SEMA3CQ99985 751 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 TTPALQ9BTX7 342 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 SPON2Q9BUD6 331 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 TREX1Q9NSU2 369 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 TMEM248Q9NWD8 314 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 XPR1Q9UBH6 696 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 FBXO5Q9UKT4 447 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 CRYL1Q9Y2S2 319 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 FIS1Q9Y3D6 152 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 MYO7AQ13402 2215 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 PSMD3O43242 534 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 DCXO43602 365 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 JUNP05412 331 aaKnown RBP10.73□□□□□ -0.69
CUX1-217ENST00000558836 SERPINA6P08185 405 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 IRF1P10914 325 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 STMN1P16949 149 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 GRK2P25098 689 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 SERPINH1P50454 418 aaKnown RBP10.73□□□□□ -0.69
CUX1-217ENST00000558836 CSHL1Q14406 222 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 TRIP4Q15650 581 aaPredicted RBP10.73□□□□□ -0.69
CUX1-217ENST00000558836 DENND1CQ8IV53 801 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 TDRD5Q8NAT2 981 aaKnown RBP10.73□□□□□ -0.69
CUX1-217ENST00000558836 PXYLP1Q8TE99 480 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 BHMTQ93088 406 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 OR52B2Q96RD2 323 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 TLE6Q9H808 572 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 CYP4F12Q9HCS2 524 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 OXSMQ9NWU1 459 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 ACOT9Q9Y305 439 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 ARL5AQ9Y689 179 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 COL4A4P53420 1690 aaPredicted RBP10.73□□□□□ -0.69
CUX1-217ENST00000558836 ANKRD12Q6UB98 2062 aa10.73□□□□□ -0.69
CUX1-217ENST00000558836 A0A0U1RQS6 177 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 OR6C75A6NL08 312 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 TMEM233B4DJY2 109 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 TSPAN3O60637 253 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 KRT36O76013 467 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 PRSS56P0CW18 603 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms