RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 PRKAA1Q13131 559 aa13.03□□□□□ -0.32
LDLR-207ENST00000558013 PCBP1Q15365 356 aaKnown RBP eCLIP13.03□□□□□ -0.32
LDLR-207ENST00000558013 TRIM67Q6ZTA4 783 aa13.03□□□□□ -0.32
LDLR-207ENST00000558013 HMGCLL1Q8TB92 370 aa13.03□□□□□ -0.32
LDLR-207ENST00000558013 ZC3H15Q8WU90 426 aaKnown RBP13.03□□□□□ -0.32
LDLR-207ENST00000558013 SREK1Q8WXA9 508 aaKnown RBP13.03□□□□□ -0.32
LDLR-207ENST00000558013 KLHL5Q96PQ7 755 aa13.03□□□□□ -0.32
LDLR-207ENST00000558013 A0A1B0GTW7 788 aa13.02□□□□□ -0.32
LDLR-207ENST00000558013 MTSS1O43312 755 aa13.02□□□□□ -0.32
LDLR-207ENST00000558013 F9P00740 461 aa13.02□□□□□ -0.32
LDLR-207ENST00000558013 CHRNA1P02708 482 aa13.02□□□□□ -0.32
LDLR-207ENST00000558013 SPATA31D3P0C874 917 aa13.02□□□□□ -0.32
LDLR-207ENST00000558013 PRDX6P30041 224 aa13.02□□□□□ -0.32
LDLR-207ENST00000558013 KCNC1P48547 511 aa13.02□□□□□ -0.32
LDLR-207ENST00000558013 AIF1P55008 147 aa13.02□□□□□ -0.32
LDLR-207ENST00000558013 UPP1Q16831 310 aa13.02□□□□□ -0.32
LDLR-207ENST00000558013 CWF19L1Q69YN2 538 aaKnown RBP13.02□□□□□ -0.32
LDLR-207ENST00000558013 CXCL17Q6UXB2 119 aa13.02□□□□□ -0.32
LDLR-207ENST00000558013 SPATA31D4Q6ZUB0 917 aa13.02□□□□□ -0.32
LDLR-207ENST00000558013 ANKRD49Q8WVL7 239 aa13.02□□□□□ -0.32
LDLR-207ENST00000558013 MRGPRX2Q96LB1 330 aa13.02□□□□□ -0.32
LDLR-207ENST00000558013 TSNARE1Q96NA8 513 aa13.02□□□□□ -0.32
LDLR-207ENST00000558013 PKP2Q99959 881 aa13.02□□□□□ -0.32
LDLR-207ENST00000558013 SPATA16Q9BXB7 569 aa13.02□□□□□ -0.32
LDLR-207ENST00000558013 FSD1LQ9BXM9 530 aa13.02□□□□□ -0.32
LDLR-207ENST00000558013 NMUR1Q9HB89 426 aa13.02□□□□□ -0.32
LDLR-207ENST00000558013 ZBTB26Q9HCK0 441 aa13.02□□□□□ -0.32
LDLR-207ENST00000558013 MKI67P46013 3256 aaKnown RBP13.02□□□□□ -0.32
LDLR-207ENST00000558013 OR51F1A6NGY5 319 aa13.02□□□□□ -0.33
LDLR-207ENST00000558013 SDHDO14521 159 aa13.02□□□□□ -0.33
LDLR-207ENST00000558013 RALGDSQ12967 914 aa13.02□□□□□ -0.33
LDLR-207ENST00000558013 FAM110CQ1W6H9 321 aa13.02□□□□□ -0.33
LDLR-207ENST00000558013 OGFRL1Q5TC84 451 aaPredicted RBP13.02□□□□□ -0.33
LDLR-207ENST00000558013 UGT2A3Q6UWM9 527 aa13.02□□□□□ -0.33
LDLR-207ENST00000558013 LAYNQ6UX15 382 aa13.02□□□□□ -0.33
LDLR-207ENST00000558013 ICA1LQ8NDH6 482 aa13.02□□□□□ -0.33
LDLR-207ENST00000558013 OR9I1Q8NGQ6 314 aa13.02□□□□□ -0.33
LDLR-207ENST00000558013 RP9Q8TA86 221 aaKnown RBP13.02□□□□□ -0.33
LDLR-207ENST00000558013 CNDP1Q96KN2 507 aa13.02□□□□□ -0.33
LDLR-207ENST00000558013 VAT1Q99536 393 aa13.02□□□□□ -0.33
LDLR-207ENST00000558013 FBXO5Q9UKT4 447 aa13.02□□□□□ -0.33
LDLR-207ENST00000558013 CDH9Q9ULB4 789 aa13.02□□□□□ -0.33
LDLR-207ENST00000558013 PSMD13Q9UNM6 376 aa13.02□□□□□ -0.33
LDLR-207ENST00000558013 MGEA5O60502 916 aa13.02□□□□□ -0.33
LDLR-207ENST00000558013 DNAJA2O60884 412 aa13.02□□□□□ -0.33
LDLR-207ENST00000558013 INHBEP58166 350 aa13.02□□□□□ -0.33
LDLR-207ENST00000558013 CDKL1Q00532 357 aa13.02□□□□□ -0.33
LDLR-207ENST00000558013 ART3Q13508 389 aa13.02□□□□□ -0.33
LDLR-207ENST00000558013 FRG1Q14331 258 aaKnown RBP13.02□□□□□ -0.33
LDLR-207ENST00000558013 C6orf52Q5T4I8 152 aa13.02□□□□□ -0.33
LDLR-207ENST00000558013 SLC45A3Q96JT2 553 aa13.02□□□□□ -0.33
LDLR-207ENST00000558013 TRAPPC9Q96Q05 1148 aa13.02□□□□□ -0.33
LDLR-207ENST00000558013 SLC39A3Q9BRY0 314 aa13.02□□□□□ -0.33
LDLR-207ENST00000558013 TRIM4Q9C037 500 aa13.02□□□□□ -0.33
LDLR-207ENST00000558013 SEMA6AQ9H2E6 1030 aa13.02□□□□□ -0.33
LDLR-207ENST00000558013 CSNK1G1Q9HCP0 422 aa13.02□□□□□ -0.33
LDLR-207ENST00000558013 OSER1Q9NX31 292 aa13.02□□□□□ -0.33
LDLR-207ENST00000558013 CLIC5Q9NZA1 410 aa13.02□□□□□ -0.33
LDLR-207ENST00000558013 APPL1Q9UKG1 709 aa13.02□□□□□ -0.33
LDLR-207ENST00000558013 TCAF1Q9Y4C2 921 aa13.02□□□□□ -0.33
LDLR-207ENST00000558013 KCTD3Q9Y597 815 aa13.02□□□□□ -0.33
LDLR-207ENST00000558013 MYLKQ15746 1914 aa13.01□□□□□ -0.33
LDLR-207ENST00000558013 C15orf38-AP3S2A0A0A6YYH1 394 aa13.01□□□□□ -0.33
LDLR-207ENST00000558013 CASQ2O14958 399 aaPredicted RBP13.01□□□□□ -0.33
LDLR-207ENST00000558013 CACNG3O60359 315 aa13.01□□□□□ -0.33
LDLR-207ENST00000558013 CSPG5O95196 566 aa13.01□□□□□ -0.33
LDLR-207ENST00000558013 PMLP29590 882 aa13.01□□□□□ -0.33
LDLR-207ENST00000558013 ADRA1AP35348 466 aa13.01□□□□□ -0.33
LDLR-207ENST00000558013 PURAQ00577 322 aaKnown RBP13.01□□□□□ -0.33
LDLR-207ENST00000558013 SULT2A1Q06520 285 aa13.01□□□□□ -0.33
LDLR-207ENST00000558013 PTPRCAPQ14761 206 aa13.01□□□□□ -0.33
LDLR-207ENST00000558013 FSCN1Q16658 493 aaKnown RBP13.01□□□□□ -0.33
LDLR-207ENST00000558013 INTS6LQ5JSJ4 861 aaKnown RBP13.01□□□□□ -0.33
LDLR-207ENST00000558013 CLEC6AQ6EIG7 209 aa13.01□□□□□ -0.33
LDLR-207ENST00000558013 ARPINQ7Z6K5 226 aa13.01□□□□□ -0.33
LDLR-207ENST00000558013 GTF3C2Q8WUA4 911 aaPredicted RBP13.01□□□□□ -0.33
LDLR-207ENST00000558013 CNBD2Q96M20 576 aa13.01□□□□□ -0.33
LDLR-207ENST00000558013 ADA2Q9NZK5 511 aa13.01□□□□□ -0.33
LDLR-207ENST00000558013 CCDC167Q9P0B6 97 aa13.01□□□□□ -0.33
LDLR-207ENST00000558013 RAD54BQ9Y620 910 aa13.01□□□□□ -0.33
LDLR-207ENST00000558013 J3KR12 359 aa13.01□□□□□ -0.33
LDLR-207ENST00000558013 YWHAQP27348 245 aa13.01□□□□□ -0.33
LDLR-207ENST00000558013 ROR2Q01974 943 aaKnown RBP13.01□□□□□ -0.33
LDLR-207ENST00000558013 PITRM1Q5JRX3 1037 aa13.01□□□□□ -0.33
LDLR-207ENST00000558013 BTBD8Q5XKL5 378 aa13.01□□□□□ -0.33
LDLR-207ENST00000558013 GDF6Q6KF10 455 aaPredicted RBP13.01□□□□□ -0.33
LDLR-207ENST00000558013 NEPROQ6NW34 567 aa13.01□□□□□ -0.33
LDLR-207ENST00000558013 IYDQ6PHW0 289 aa13.01□□□□□ -0.33
LDLR-207ENST00000558013 CD300LGQ6UXG3 332 aa13.01□□□□□ -0.33
LDLR-207ENST00000558013 ANKRD23Q86SG2 305 aa13.01□□□□□ -0.33
LDLR-207ENST00000558013 LINC00523Q86TU6 105 aa13.01□□□□□ -0.33
LDLR-207ENST00000558013 PIM3Q86V86 326 aa13.01□□□□□ -0.33
LDLR-207ENST00000558013 SPATA24Q86W54 205 aa13.01□□□□□ -0.33
LDLR-207ENST00000558013 FAM110BQ8TC76 370 aa13.01□□□□□ -0.33
LDLR-207ENST00000558013 GPR152Q8TDT2 470 aa13.01□□□□□ -0.33
LDLR-207ENST00000558013 FCRL5Q96RD9 977 aa13.01□□□□□ -0.33
LDLR-207ENST00000558013 IL12RB2Q99665 862 aa13.01□□□□□ -0.33
LDLR-207ENST00000558013 MRPL46Q9H2W6 279 aaKnown RBP13.01□□□□□ -0.33
LDLR-207ENST00000558013 FBRSL1Q9HCM7 1045 aaKnown RBP13.01□□□□□ -0.33
LDLR-207ENST00000558013 IGSF5Q9NSI5 407 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms