RNA–Protein interactions for RNA: ENST00000555067.1

VRK1-203, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 604 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-203ENST00000555067 TSPAN3O60637 253 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 BEST1O76090 585 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 F9P00740 461 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 IFNA2P01563 188 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 CSH1P0DML2 217 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 CSH2P0DML3 217 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 LAMP2P13473 410 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 TGM2P21980 687 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 KRTAP5-9P26371 169 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 CIITAP33076 1130 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 GGT5P36269 586 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 ARL3P36405 182 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 HADHAP40939 763 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 RGS2P41220 211 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 KRTAP10-5P60370 271 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 CALD1Q05682 793 aaKnown RBP5.6□□□□□ -1.51
VRK1-203ENST00000555067 WASHC5Q12768 1159 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 CHAF1BQ13112 559 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 SCARB2Q14108 478 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 TRIM60Q495X7 471 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 ZNF628Q5EBL2 1059 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 FAM69AQ5T7M9 428 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 PLBD1Q6P4A8 553 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 MFSD6Q6ZSS7 791 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 TTC30AQ86WT1 665 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 ADSSL1Q8N142 457 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 ADPRHL1Q8NDY3 354 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 SRFBP1Q8NEF9 429 aaKnown RBP5.6□□□□□ -1.51
VRK1-203ENST00000555067 SPATA17Q96L03 361 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 ZWILCHQ9H900 591 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 GRPEL1Q9HAV7 217 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 BRF2Q9HAW0 419 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 KCNK9Q9NPC2 374 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 CCDC177Q9NQR7 707 aaPredicted RBP5.6□□□□□ -1.51
VRK1-203ENST00000555067 DIAPH3Q9NSV4 1193 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 ABCF3Q9NUQ8 709 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 PCDHGB5Q9Y5G0 923 aa5.6□□□□□ -1.51
VRK1-203ENST00000555067 GTPBP10A4D1E9 387 aaKnown RBP5.59□□□□□ -1.51
VRK1-203ENST00000555067 PTGES3LE9PB15 166 aa5.59□□□□□ -1.51
VRK1-203ENST00000555067 J3KTA2 159 aa5.59□□□□□ -1.51
VRK1-203ENST00000555067 M0QZQ0 153 aa5.59□□□□□ -1.51
VRK1-203ENST00000555067 MDM4O15151 490 aa5.59□□□□□ -1.51
VRK1-203ENST00000555067 CLEC3BP05452 202 aa5.59□□□□□ -1.51
VRK1-203ENST00000555067 SERPINA4P29622 427 aa5.59□□□□□ -1.51
VRK1-203ENST00000555067 PSMC2P35998 433 aaKnown RBP5.59□□□□□ -1.51
VRK1-203ENST00000555067 PAFAH1B1P43034 410 aa5.59□□□□□ -1.51
VRK1-203ENST00000555067 TNNT3P45378 269 aaPredicted RBP5.59□□□□□ -1.51
VRK1-203ENST00000555067 SNX16P57768 344 aa5.59□□□□□ -1.51
VRK1-203ENST00000555067 RPP30P78346 268 aaKnown RBP5.59□□□□□ -1.51
VRK1-203ENST00000555067 CSHL1Q14406 222 aa5.59□□□□□ -1.51
VRK1-203ENST00000555067 GALNTL6Q49A17 601 aa5.59□□□□□ -1.51
VRK1-203ENST00000555067 DUSP28Q4G0W2 176 aa5.59□□□□□ -1.51
VRK1-203ENST00000555067 KIAA1755Q5JYT7 1200 aa5.59□□□□□ -1.51
VRK1-203ENST00000555067 TTC39AQ5SRH9 613 aa5.59□□□□□ -1.51
VRK1-203ENST00000555067 ASPHD1Q5U4P2 390 aa5.59□□□□□ -1.51
VRK1-203ENST00000555067 C16orf89Q6UX73 402 aa5.59□□□□□ -1.51
VRK1-203ENST00000555067 LRRC8DQ7L1W4 858 aa5.59□□□□□ -1.51
VRK1-203ENST00000555067 SZRD1Q7Z422 152 aa5.59□□□□□ -1.51
VRK1-203ENST00000555067 DNAJB7Q7Z6W7 309 aaPredicted RBP5.59□□□□□ -1.51
VRK1-203ENST00000555067 ZSCAN2Q7Z7L9 614 aaPredicted RBP5.59□□□□□ -1.51
VRK1-203ENST00000555067 DCP1BQ8IZD4 617 aaKnown RBP5.59□□□□□ -1.51
VRK1-203ENST00000555067 PAQR4Q8N4S7 273 aaPredicted RBP5.59□□□□□ -1.51
VRK1-203ENST00000555067 TMEM174Q8WUU8 243 aa5.59□□□□□ -1.51
VRK1-203ENST00000555067 SNX21Q969T3 373 aa5.59□□□□□ -1.51
VRK1-203ENST00000555067 SH3KBP1Q96B97 665 aa5.59□□□□□ -1.51
VRK1-203ENST00000555067 FAM120BQ96EK7 910 aaKnown RBP5.59□□□□□ -1.51
VRK1-203ENST00000555067 CALML4Q96GE6 196 aa5.59□□□□□ -1.51
VRK1-203ENST00000555067 FAR2Q96K12 515 aa5.59□□□□□ -1.51
VRK1-203ENST00000555067 FAM84BQ96KN1 310 aaPredicted RBP5.59□□□□□ -1.51
VRK1-203ENST00000555067 JAKMIP1Q96N16 626 aaKnown RBP5.59□□□□□ -1.51
VRK1-203ENST00000555067 PAAF1Q9BRP4 392 aa5.59□□□□□ -1.51
VRK1-203ENST00000555067 OR10A4Q9H209 315 aa5.59□□□□□ -1.51
VRK1-203ENST00000555067 DBNDD1Q9H9R9 158 aa5.59□□□□□ -1.51
VRK1-203ENST00000555067 FSCN3Q9NQT6 498 aa5.59□□□□□ -1.51
VRK1-203ENST00000555067 ICKQ9UPZ9 632 aa5.59□□□□□ -1.51
VRK1-203ENST00000555067 CNTN6Q9UQ52 1028 aa5.59□□□□□ -1.51
VRK1-203ENST00000555067 TMEM5Q9Y2B1 443 aa5.59□□□□□ -1.51
VRK1-203ENST00000555067 RPS10-NUDT3A0A1W2PQS6 291 aa5.58□□□□□ -1.52
VRK1-203ENST00000555067 FAM90A20PA6NIJ5 464 aa5.58□□□□□ -1.52
VRK1-203ENST00000555067 CLGNO14967 610 aa5.58□□□□□ -1.52
VRK1-203ENST00000555067 VILLO15195 856 aa5.58□□□□□ -1.52
VRK1-203ENST00000555067 DHHO43323 396 aa5.58□□□□□ -1.52
VRK1-203ENST00000555067 TSPAN9O75954 239 aa5.58□□□□□ -1.52
VRK1-203ENST00000555067 CNTN5O94779 1100 aa5.58□□□□□ -1.52
VRK1-203ENST00000555067 TFRCP02786 760 aaKnown RBP5.58□□□□□ -1.52
VRK1-203ENST00000555067 CYP21A2P08686 494 aa5.58□□□□□ -1.52
VRK1-203ENST00000555067 NR2F1P10589 423 aa5.58□□□□□ -1.52
VRK1-203ENST00000555067 UBL4AP11441 157 aa5.58□□□□□ -1.52
VRK1-203ENST00000555067 DPP6P42658 865 aa5.58□□□□□ -1.52
VRK1-203ENST00000555067 RFX2P48378 723 aa5.58□□□□□ -1.52
VRK1-203ENST00000555067 MMP14P50281 582 aa5.58□□□□□ -1.52
VRK1-203ENST00000555067 EGR4Q05215 589 aa5.58□□□□□ -1.52
VRK1-203ENST00000555067 LRMPQ12912 555 aa5.58□□□□□ -1.52
VRK1-203ENST00000555067 PDCLQ13371 301 aa5.58□□□□□ -1.52
VRK1-203ENST00000555067 ZNF324BQ6AW86 544 aaPredicted RBP5.58□□□□□ -1.52
VRK1-203ENST00000555067 NAA16Q6N069 864 aaPredicted RBP5.58□□□□□ -1.52
VRK1-203ENST00000555067 MSANTD2Q6P1R3 559 aa5.58□□□□□ -1.52
VRK1-203ENST00000555067 WDR93Q6P2C0 686 aa5.58□□□□□ -1.52
VRK1-203ENST00000555067 KLHL24Q6TFL4 600 aa5.58□□□□□ -1.52
VRK1-203ENST00000555067 CYB5R4Q7L1T6 521 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms