RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 IL27RAQ6UWB1 636 aa12.67□□□□□ -0.38
SHMT2-214ENST00000554604 Q6ZVU0 165 aa12.67□□□□□ -0.38
SHMT2-214ENST00000554604 STRADAQ7RTN6 431 aa12.67□□□□□ -0.38
SHMT2-214ENST00000554604 ADAT2Q7Z6V5 191 aaKnown RBP12.67□□□□□ -0.38
SHMT2-214ENST00000554604 SH2D3CQ8N5H7 860 aa12.67□□□□□ -0.38
SHMT2-214ENST00000554604 PRELID2Q8N945 189 aa12.67□□□□□ -0.38
SHMT2-214ENST00000554604 DCAF4L2Q8NA75 395 aa12.67□□□□□ -0.38
SHMT2-214ENST00000554604 OR2T34Q8NGX1 318 aa12.67□□□□□ -0.38
SHMT2-214ENST00000554604 OR14C36Q8NHC7 312 aa12.67□□□□□ -0.38
SHMT2-214ENST00000554604 FAM172AQ8WUF8 416 aa12.67□□□□□ -0.38
SHMT2-214ENST00000554604 IFT81Q8WYA0 676 aa12.67□□□□□ -0.38
SHMT2-214ENST00000554604 CCDC114Q96M63 670 aa12.67□□□□□ -0.38
SHMT2-214ENST00000554604 SPON2Q9BUD6 331 aa12.67□□□□□ -0.38
SHMT2-214ENST00000554604 TRIM7Q9C029 511 aa12.67□□□□□ -0.38
SHMT2-214ENST00000554604 RAB6CQ9H0N0 254 aa12.67□□□□□ -0.38
SHMT2-214ENST00000554604 DNAAF2Q9NVR5 837 aaKnown RBP12.67□□□□□ -0.38
SHMT2-214ENST00000554604 PCYOX1Q9UHG3 505 aa12.67□□□□□ -0.38
SHMT2-214ENST00000554604 VPS51Q9UID3 782 aa12.67□□□□□ -0.38
SHMT2-214ENST00000554604 HS3ST2Q9Y278 367 aa12.67□□□□□ -0.38
SHMT2-214ENST00000554604 UTP11Q9Y3A2 253 aaKnown RBP12.67□□□□□ -0.38
SHMT2-214ENST00000554604 TRPM6Q9BX84 2022 aa12.67□□□□□ -0.38
SHMT2-214ENST00000554604 A0A0D9SEW6 157 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 ESYT3A0FGR9 886 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 ILVBLA1L0T0 632 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 UPK3BL1B0FP48 263 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 UPK3BL2E5RIL1 263 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 C1QTNF3-AMACRE9PGA6 284 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 CBX4O00257 560 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 TTI1O43156 1089 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 SNAP91O60641 907 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 CER1O95813 267 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 MT-CO1P00395 513 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 SRCP12931 536 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 ECHS1P30084 290 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 PTGIRP43119 386 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 FNTAP49354 379 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 SEMA3BQ13214 749 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 SLC14A1Q13336 389 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 LRRC38Q5VT99 294 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 DCUN1D2Q6PH85 259 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-214ENST00000554604 ZNF783Q6ZMS7 281 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 KATNAL2Q8IYT4 538 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 AADATQ8N5Z0 425 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 NIPA2Q8N8Q9 360 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 OR7D4Q8NG98 312 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 C1orf216Q8TAB5 229 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 MCEEQ96PE7 176 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 GAREM1Q9H706 876 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 LRRC19Q9H756 370 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 ATP13A1Q9HD20 1204 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 TM9SF3Q9HD45 589 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 PPARGC1AQ9UBK2 798 aaKnown RBP12.66□□□□□ -0.38
SHMT2-214ENST00000554604 ANGPTL2Q9UKU9 493 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 CACNA1BQ00975 2339 aa12.66□□□□□ -0.38
SHMT2-214ENST00000554604 TBC1D3DA0A087WVF3 549 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 TBC1D3IA0A087WXS9 549 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 TBC1D3EA0A087X179 549 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 TBC1D3KA0A087X1G2 549 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 A0A1B0GVT2 93 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 GOLGA6BA6NDN3 693 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 TBC1D3FA6NER0 549 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-214ENST00000554604 TBC1D3LB9A6J9 549 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 MCF2LO15068 1137 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 ALOX15BO15296 676 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 IGHV4-34P06331 123 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 FAM153BP0C7A2 387 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 TBC1D3HP0C7X1 549 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 RARAP10276 462 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 ETFBP38117 255 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 HSPA9P38646 679 aaKnown RBP12.65□□□□□ -0.38
SHMT2-214ENST00000554604 RECQLP46063 649 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-214ENST00000554604 GRIA4P48058 902 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 ADPRHP54922 357 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 HDAC4P56524 1084 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 GNA12Q03113 381 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 PIGHQ14442 188 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-214ENST00000554604 HLTFQ14527 1009 aaKnown RBP eCLIP12.65□□□□□ -0.38
SHMT2-214ENST00000554604 POM121L1PQ3SYA9 428 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 FAM153CQ494X1 144 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 DUPD1Q68J44 220 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 TBC1D3GQ6DHY5 549 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 TBC1D3CQ6IPX1 549 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 RETSATQ6NUM9 610 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 SCYL2Q6P3W7 929 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 LINGO4Q6UY18 593 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 PIP4P1Q86T03 277 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 TBC1D3Q8IZP1 549 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-214ENST00000554604 EXD1Q8NHP7 514 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 PIP4K2CQ8TBX8 421 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 FNIP1Q8TF40 1166 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 CENPIQ92674 756 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-214ENST00000554604 SLCO2A1Q92959 643 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 MAGOHBQ96A72 148 aaKnown RBP12.65□□□□□ -0.38
SHMT2-214ENST00000554604 GDAP1L1Q96MZ0 367 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 ERP44Q9BS26 406 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 MAGEB5Q9BZ81 275 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 OSBPL2Q9H1P3 480 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 FAM153AQ9UHL3 310 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 SARDHQ9UL12 918 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms