RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 NIPAL4Q0D2K0 466 aa12.39□□□□□ -0.43
SHMT2-209ENST00000553949 ZNF776Q68DI1 518 aaPredicted RBP12.39□□□□□ -0.43
SHMT2-209ENST00000553949 ITPRIPL1Q6GPH6 555 aa12.39□□□□□ -0.43
SHMT2-209ENST00000553949 ANO7Q6IWH7 933 aa12.39□□□□□ -0.43
SHMT2-209ENST00000553949 CCDC137Q6PK04 289 aaKnown RBP12.39□□□□□ -0.43
SHMT2-209ENST00000553949 GSTA5Q7RTV2 222 aa12.39□□□□□ -0.43
SHMT2-209ENST00000553949 CACUL1Q86Y37 369 aa12.39□□□□□ -0.43
SHMT2-209ENST00000553949 CAMKK1Q8N5S9 505 aa12.39□□□□□ -0.43
SHMT2-209ENST00000553949 CCDC89Q8N998 374 aa12.39□□□□□ -0.43
SHMT2-209ENST00000553949 TMIEQ8NEW7 156 aa12.39□□□□□ -0.43
SHMT2-209ENST00000553949 MDGA1Q8NFP4 955 aa12.39□□□□□ -0.43
SHMT2-209ENST00000553949 ATL2Q8NHH9 583 aa12.39□□□□□ -0.43
SHMT2-209ENST00000553949 PIP4K2CQ8TBX8 421 aa12.39□□□□□ -0.43
SHMT2-209ENST00000553949 HMGB4Q8WW32 186 aa12.39□□□□□ -0.43
SHMT2-209ENST00000553949 PRCCQ92733 491 aaPredicted RBP12.39□□□□□ -0.43
SHMT2-209ENST00000553949 NSMCE3Q96MG7 304 aa12.39□□□□□ -0.43
SHMT2-209ENST00000553949 TUBGCP5Q96RT8 1024 aa12.39□□□□□ -0.43
SHMT2-209ENST00000553949 OSBPL1AQ9BXW6 950 aa12.39□□□□□ -0.43
SHMT2-209ENST00000553949 CPEB1Q9BZB8 566 aaKnown RBP12.39□□□□□ -0.43
SHMT2-209ENST00000553949 DDX47Q9H0S4 455 aaKnown RBP12.39□□□□□ -0.43
SHMT2-209ENST00000553949 SLC25A51Q9H1U9 297 aa12.39□□□□□ -0.43
SHMT2-209ENST00000553949 GBA3Q9H227 469 aa12.39□□□□□ -0.43
SHMT2-209ENST00000553949 BCCIPQ9P287 314 aaKnown RBP eCLIP12.39□□□□□ -0.43
SHMT2-209ENST00000553949 RSPH14Q9UHP6 348 aa12.39□□□□□ -0.43
SHMT2-209ENST00000553949 SARDHQ9UL12 918 aa12.39□□□□□ -0.43
SHMT2-209ENST00000553949 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-209ENST00000553949 CCDC188H7C350 402 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 DLL1O00548 723 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 LAMTOR5O43504 91 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 PIGNO95427 931 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 ADH1BP00325 375 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 UGT2B4P06133 528 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 MMP2P08253 660 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 ETS1P14921 441 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 NFKB1P19838 968 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 C5AR1P21730 350 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 SLC8A1P32418 973 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 CD86P42081 329 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 LMNB2Q03252 620 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 IHHQ14623 411 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 GRM3Q14832 879 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 CST6Q15828 149 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 P3H1Q32P28 736 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 FAM46CQ5VWP2 391 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 TSSK4Q6SA08 328 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 KIAA1324Q6UXG2 1013 aaKnown RBP12.38□□□□□ -0.43
SHMT2-209ENST00000553949 GDPD4Q6W3E5 623 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 ARHGEF18Q6ZSZ5 1173 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 ZNF572Q7Z3I7 529 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-209ENST00000553949 PRUNE1Q86TP1 453 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 PRPF39Q86UA1 669 aaKnown RBP12.38□□□□□ -0.43
SHMT2-209ENST00000553949 RASSF3Q86WH2 238 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 CAMK1DQ8IU85 385 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 KLHL7Q8IXQ5 586 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 MAML2Q8IZL2 1156 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-209ENST00000553949 PGBD3Q8N328 593 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 SPATA4Q8NEY3 305 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 SIPA1Q96FS4 1042 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 IMP4Q96G21 291 aaKnown RBP12.38□□□□□ -0.43
SHMT2-209ENST00000553949 ZNF641Q96N77 438 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-209ENST00000553949 FCRL5Q96RD9 977 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 PABPC3Q9H361 631 aaKnown RBP12.38□□□□□ -0.43
SHMT2-209ENST00000553949 ATP13A3Q9H7F0 1226 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 EBF1Q9UH73 591 aa12.38□□□□□ -0.43
SHMT2-209ENST00000553949 F5H423 210 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-209ENST00000553949 KPNA3O00505 521 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-209ENST00000553949 MID1O15344 667 aa12.37□□□□□ -0.43
SHMT2-209ENST00000553949 DNTTP04053 509 aa12.37□□□□□ -0.43
SHMT2-209ENST00000553949 SERPINF2P08697 491 aa12.37□□□□□ -0.43
SHMT2-209ENST00000553949 ZSCAN5DPP0CG00 497 aa12.37□□□□□ -0.43
SHMT2-209ENST00000553949 TDGF1P13385 188 aa12.37□□□□□ -0.43
SHMT2-209ENST00000553949 SERPINA4P29622 427 aa12.37□□□□□ -0.43
SHMT2-209ENST00000553949 HOXA6P31267 233 aa12.37□□□□□ -0.43
SHMT2-209ENST00000553949 ACTN2P35609 894 aa12.37□□□□□ -0.43
SHMT2-209ENST00000553949 PXNP49023 591 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-209ENST00000553949 METAP1P53582 386 aa12.37□□□□□ -0.43
SHMT2-209ENST00000553949 SKOR1P84550 965 aa12.37□□□□□ -0.43
SHMT2-209ENST00000553949 ZBTB16Q05516 673 aa12.37□□□□□ -0.43
SHMT2-209ENST00000553949 BCL2L1Q07817 233 aa12.37□□□□□ -0.43
SHMT2-209ENST00000553949 PARP6Q2NL67 630 aa12.37□□□□□ -0.43
SHMT2-209ENST00000553949 POM121L1PQ3SYA9 428 aa12.37□□□□□ -0.43
SHMT2-209ENST00000553949 ZNF805Q5CZA5 627 aa12.37□□□□□ -0.43
SHMT2-209ENST00000553949 DNTTIP2Q5QJE6 756 aaKnown RBP12.37□□□□□ -0.43
SHMT2-209ENST00000553949 GLIS1Q8NBF1 620 aa12.37□□□□□ -0.43
SHMT2-209ENST00000553949 SPATA22Q8NHS9 363 aa12.37□□□□□ -0.43
SHMT2-209ENST00000553949 GRK7Q8WTQ7 553 aa12.37□□□□□ -0.43
SHMT2-209ENST00000553949 TADA1Q96BN2 335 aa12.37□□□□□ -0.43
SHMT2-209ENST00000553949 PPP1R16AQ96I34 528 aa12.37□□□□□ -0.43
SHMT2-209ENST00000553949 RUNDC3BQ96NL0 473 aa12.37□□□□□ -0.43
SHMT2-209ENST00000553949 RBM15Q96T37 977 aaKnown RBP eCLIP12.37□□□□□ -0.43
SHMT2-209ENST00000553949 SUV39H2Q9H5I1 410 aa12.37□□□□□ -0.43
SHMT2-209ENST00000553949 PCYOX1Q9UHG3 505 aa12.37□□□□□ -0.43
SHMT2-209ENST00000553949 FEZ2Q9UHY8 353 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-209ENST00000553949 SCML1Q9UN30 329 aa12.37□□□□□ -0.43
SHMT2-209ENST00000553949 PCDHGC4Q9Y5F7 938 aa12.37□□□□□ -0.43
SHMT2-209ENST00000553949 RAI2Q9Y5P3 530 aa12.37□□□□□ -0.43
SHMT2-209ENST00000553949 MYO18AQ92614 2054 aaKnown RBP12.37□□□□□ -0.43
SHMT2-209ENST00000553949 ATG2BQ96BY7 2078 aa12.37□□□□□ -0.43
SHMT2-209ENST00000553949 TRAFD1O14545 582 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-209ENST00000553949 HTRA2O43464 458 aaPredicted RBP12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms