RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 H6PDO95479 791 aa12.39□□□□□ -0.43
SHMT2-207ENST00000553837 CHRNA1P02708 482 aa12.39□□□□□ -0.43
SHMT2-207ENST00000553837 SERPINE1P05121 402 aa12.39□□□□□ -0.43
SHMT2-207ENST00000553837 NCAM1P13591 858 aa12.39□□□□□ -0.43
SHMT2-207ENST00000553837 PGAM1P18669 254 aa12.39□□□□□ -0.43
SHMT2-207ENST00000553837 CD68P34810 354 aaPredicted RBP12.39□□□□□ -0.43
SHMT2-207ENST00000553837 SCNN1GP51170 649 aa12.39□□□□□ -0.43
SHMT2-207ENST00000553837 IRF5Q13568 498 aa12.39□□□□□ -0.43
SHMT2-207ENST00000553837 CYTH1Q15438 398 aa12.39□□□□□ -0.43
SHMT2-207ENST00000553837 GDF6Q6KF10 455 aaPredicted RBP12.39□□□□□ -0.43
SHMT2-207ENST00000553837 RWDD4Q6NW29 188 aaKnown RBP12.39□□□□□ -0.43
SHMT2-207ENST00000553837 AGMOQ6ZNB7 445 aa12.39□□□□□ -0.43
SHMT2-207ENST00000553837 HACE1Q8IYU2 909 aa12.39□□□□□ -0.43
SHMT2-207ENST00000553837 DLG3Q92796 817 aa12.39□□□□□ -0.43
SHMT2-207ENST00000553837 LIN28AQ9H9Z2 209 aaKnown RBP12.39□□□□□ -0.43
SHMT2-207ENST00000553837 VPS45Q9NRW7 570 aa12.39□□□□□ -0.43
SHMT2-207ENST00000553837 QPCTLQ9NXS2 382 aa12.39□□□□□ -0.43
SHMT2-207ENST00000553837 HEMK1Q9Y5R4 338 aaPredicted RBP12.39□□□□□ -0.43
SHMT2-207ENST00000553837 NUP205Q92621 2012 aa12.39□□□□□ -0.43
SHMT2-207ENST00000553837 ARL5CA6NH57 179 aa12.39□□□□□ -0.43
SHMT2-207ENST00000553837 ZBTB24O43167 697 aaPredicted RBP12.39□□□□□ -0.43
SHMT2-207ENST00000553837 DCXO43602 365 aa12.39□□□□□ -0.43
SHMT2-207ENST00000553837 FGF3P11487 239 aaPredicted RBP12.39□□□□□ -0.43
SHMT2-207ENST00000553837 ARRB2P32121 409 aa12.39□□□□□ -0.43
SHMT2-207ENST00000553837 RPL10AP62906 217 aaKnown RBP12.39□□□□□ -0.43
SHMT2-207ENST00000553837 MRPS22P82650 360 aaKnown RBP12.39□□□□□ -0.43
SHMT2-207ENST00000553837 SCAPQ12770 1279 aa12.39□□□□□ -0.43
SHMT2-207ENST00000553837 ZBTB17Q13105 803 aa12.39□□□□□ -0.43
SHMT2-207ENST00000553837 PAN2Q504Q3 1202 aaKnown RBP12.39□□□□□ -0.43
SHMT2-207ENST00000553837 TIGD5Q53EQ6 642 aa12.39□□□□□ -0.43
SHMT2-207ENST00000553837 N4BP2L1Q5TBK1 243 aaPredicted RBP12.39□□□□□ -0.43
SHMT2-207ENST00000553837 MAVSQ7Z434 540 aa12.39□□□□□ -0.43
SHMT2-207ENST00000553837 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.39□□□□□ -0.43
SHMT2-207ENST00000553837 BORCS5Q969J3 196 aa12.39□□□□□ -0.43
SHMT2-207ENST00000553837 NTAN1Q96AB6 310 aa12.39□□□□□ -0.43
SHMT2-207ENST00000553837 TMIGD2Q96BF3 282 aa12.39□□□□□ -0.43
SHMT2-207ENST00000553837 MLPHQ9BV36 600 aaPredicted RBP12.39□□□□□ -0.43
SHMT2-207ENST00000553837 AGO3Q9H9G7 860 aaKnown RBP12.39□□□□□ -0.43
SHMT2-207ENST00000553837 PNPOQ9NVS9 261 aa12.39□□□□□ -0.43
SHMT2-207ENST00000553837 DDIT4Q9NX09 232 aa12.39□□□□□ -0.43
SHMT2-207ENST00000553837 VPS28Q9UK41 221 aa12.39□□□□□ -0.43
SHMT2-207ENST00000553837 MYRFQ9Y2G1 1151 aa12.39□□□□□ -0.43
SHMT2-207ENST00000553837 COQ6Q9Y2Z9 468 aa12.39□□□□□ -0.43
SHMT2-207ENST00000553837 BPTFQ12830 3046 aa12.38□□□□□ -0.43
SHMT2-207ENST00000553837 C9IYK1 514 aa12.38□□□□□ -0.43
SHMT2-207ENST00000553837 ZMPSTE24O75844 475 aa12.38□□□□□ -0.43
SHMT2-207ENST00000553837 LTFP02788 710 aa12.38□□□□□ -0.43
SHMT2-207ENST00000553837 THP07101 528 aa12.38□□□□□ -0.43
SHMT2-207ENST00000553837 KCNA4P22459 653 aa12.38□□□□□ -0.43
SHMT2-207ENST00000553837 CNTFP26441 200 aa12.38□□□□□ -0.43
SHMT2-207ENST00000553837 HMOX2P30519 316 aa12.38□□□□□ -0.43
SHMT2-207ENST00000553837 GJA9P57773 515 aa12.38□□□□□ -0.43
SHMT2-207ENST00000553837 TXNL4AP83876 142 aaKnown RBP12.38□□□□□ -0.43
SHMT2-207ENST00000553837 PFKPQ01813 784 aa12.38□□□□□ -0.43
SHMT2-207ENST00000553837 IFRD2Q12894 506 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-207ENST00000553837 KLF10Q13118 480 aa12.38□□□□□ -0.43
SHMT2-207ENST00000553837 PEX6Q13608 980 aa12.38□□□□□ -0.43
SHMT2-207ENST00000553837 TAF1CQ15572 869 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-207ENST00000553837 METTL21CQ5VZV1 264 aa12.38□□□□□ -0.43
SHMT2-207ENST00000553837 ELMSAN1Q6PJG2 1045 aa12.38□□□□□ -0.43
SHMT2-207ENST00000553837 C17orf99Q6UX52 265 aa12.38□□□□□ -0.43
SHMT2-207ENST00000553837 CXCL17Q6UXB2 119 aa12.38□□□□□ -0.43
SHMT2-207ENST00000553837 PHTF2Q8N3S3 785 aa12.38□□□□□ -0.43
SHMT2-207ENST00000553837 LZTR1Q8N653 840 aa12.38□□□□□ -0.43
SHMT2-207ENST00000553837 SLC9A7Q96T83 725 aa12.38□□□□□ -0.43
SHMT2-207ENST00000553837 KATNAL1Q9BW62 490 aa12.38□□□□□ -0.43
SHMT2-207ENST00000553837 TMLHEQ9NVH6 421 aa12.38□□□□□ -0.43
SHMT2-207ENST00000553837 ZNF358Q9NW07 568 aa12.38□□□□□ -0.43
SHMT2-207ENST00000553837 KLHL8Q9P2G9 620 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-207ENST00000553837 FUOMA2VDF0 154 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 ZNF701M0R085 212 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-207ENST00000553837 FBP2O00757 339 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 MGEA5O60502 916 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 GSTT2P0CG29 244 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 GSTT2BP0CG30 244 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 CA8P35219 290 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 ABCG1P45844 678 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 CCR3P51677 355 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 TPI1P60174 286 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 ESRRGP62508 458 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 TGFBIQ15582 683 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 ZNF423Q2M1K9 1284 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 ZNF829Q3KNS6 432 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-207ENST00000553837 KCTD11Q693B1 232 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 CD300LGQ6UXG3 332 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 CHERPQ8IWX8 916 aaKnown RBP12.37□□□□□ -0.43
SHMT2-207ENST00000553837 LILRA2Q8N149 483 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 KYQ8NBH2 561 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 ZSCAN18Q8TBC5 510 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-207ENST00000553837 ATP2A3Q93084 1043 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 RANBP9Q96S59 729 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 TMEM209Q96SK2 561 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 AGAP2Q99490 1192 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 PKP2Q99959 881 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 APOL2Q9BQE5 337 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 COLEC11Q9BWP8 271 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 DNAI2Q9GZS0 605 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 CNGB3Q9NQW8 809 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 SELENONQ9NZV5 590 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 EPS15L1Q9UBC2 864 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms