RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 CHST12Q9NRB3 414 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 TMLHEQ9NVH6 421 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 GTSE1Q9NYZ3 720 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 FLRT1Q9NZU1 646 aa7.59□□□□□ -1.19
LIMA1-213ENST00000552720 CCL15-CCL14A0A0B4J2E2 113 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 TTC24A2A3L6 582 aaPredicted RBP7.58□□□□□ -1.2
LIMA1-213ENST00000552720 CCL22O00626 93 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 SDHDO14521 159 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 STRNO43815 780 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 CRTAMO95727 393 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 MYL3P08590 195 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 ATP6V1B1P15313 513 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 TSPAN8P19075 237 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 AXLP30530 894 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 HCAR3P49019 387 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 SEPT6Q14141 434 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 ADGRE1Q14246 886 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 FRG1Q14331 258 aaKnown RBP7.58□□□□□ -1.2
LIMA1-213ENST00000552720 CSHL1Q14406 222 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 RBBP5Q15291 538 aaKnown RBP7.58□□□□□ -1.2
LIMA1-213ENST00000552720 PCSK7Q16549 785 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 CCL15Q16663 113 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 IQSEC1Q6DN90 963 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 ZNF470Q6ECI4 717 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 PKN3Q6P5Z2 889 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 C16orf89Q6UX73 402 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 ZNF467Q7Z7K2 595 aaPredicted RBP7.58□□□□□ -1.2
LIMA1-213ENST00000552720 TLK2Q86UE8 772 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 CPSF7Q8N684 471 aaKnown RBP7.58□□□□□ -1.2
LIMA1-213ENST00000552720 METTL25Q8N6Q8 603 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 DQX1Q8TE96 717 aaKnown RBP7.58□□□□□ -1.2
LIMA1-213ENST00000552720 SH3RF2Q8TEC5 729 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 NAT14Q8WUY8 206 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 BRI3BPQ8WY22 251 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 MYLPFQ96A32 169 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 PGAP3Q96FM1 320 aaPredicted RBP7.58□□□□□ -1.2
LIMA1-213ENST00000552720 LRGUKQ96M69 825 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 TSNARE1Q96NA8 513 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 RTP3Q9BQQ7 232 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 SLC39A8Q9C0K1 460 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 BRD8Q9H0E9 1235 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 TRPV6Q9H1D0 765 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 SEMA6AQ9H2E6 1030 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 SPON1Q9HCB6 807 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 SFMBT1Q9UHJ3 866 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 PRPF19Q9UMS4 504 aaKnown RBP7.58□□□□□ -1.2
LIMA1-213ENST00000552720 GNEQ9Y223 722 aaKnown RBP7.58□□□□□ -1.2
LIMA1-213ENST00000552720 ANKRD6Q9Y2G4 727 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 AP4B1Q9Y6B7 739 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 PEX1O43933 1283 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 H2AFYO75367 372 aaKnown RBP7.58□□□□□ -1.2
LIMA1-213ENST00000552720 RNASEH2AO75792 299 aaKnown RBP7.58□□□□□ -1.2
LIMA1-213ENST00000552720 HLA-DQB2P05538 268 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 PABPC4LP0CB38 370 aaKnown RBP7.58□□□□□ -1.2
LIMA1-213ENST00000552720 PIM1P11309 404 aaPredicted RBP7.58□□□□□ -1.2
LIMA1-213ENST00000552720 STMN1P16949 149 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 ME2P23368 584 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 PSEN2P49810 448 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 SCNN1GP51170 649 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 AIF1P55008 147 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 C1QTNF8P60827 252 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 XIAPP98170 497 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 MYBPC1Q00872 1141 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 RALGDSQ12967 914 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 BIRC2Q13490 618 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 ART3Q13508 389 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 PRPSAP1Q14558 356 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 TIGD5Q53EQ6 642 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 PCID2Q5JVF3 399 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 LDLRAD1Q5T700 205 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 IL23RQ5VWK5 629 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 PM20D1Q6GTS8 502 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 IYDQ6PHW0 289 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 TRIM67Q6ZTA4 783 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 LDB1Q86U70 411 aaPredicted RBP7.58□□□□□ -1.2
LIMA1-213ENST00000552720 SPATA24Q86W54 205 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 PGAM4Q8N0Y7 254 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 RDH11Q8TC12 318 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 ATP6V1E2Q96A05 226 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 OLFM1Q99784 485 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 MPP6Q9NZW5 540 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 C6orf203Q9P0P8 240 aaPredicted RBP7.58□□□□□ -1.2
LIMA1-213ENST00000552720 GMPR2Q9P2T1 348 aaKnown RBP7.58□□□□□ -1.2
LIMA1-213ENST00000552720 RAD54BQ9Y620 910 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 PATJQ8NI35 1801 aa7.58□□□□□ -1.2
LIMA1-213ENST00000552720 ZFC3H1O60293 1989 aaKnown RBP7.58□□□□□ -1.2
LIMA1-213ENST00000552720 LAMA3Q16787 3333 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 F8W810 466 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 ACOT8O14734 319 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 MTSS1O43312 755 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 MAFKO60675 156 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 CSPG5O95196 566 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 MOCS2O96007 188 aaPredicted RBP7.57□□□□□ -1.2
LIMA1-213ENST00000552720 TFAP2AP05549 437 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 APOA4P06727 396 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 CTSHP09668 335 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 NELFEP18615 380 aaKnown RBP7.57□□□□□ -1.2
LIMA1-213ENST00000552720 FGFR3P22607 806 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 EPHX2P34913 555 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 BRCC3P46736 316 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms