RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 STIP1P31948 543 aaKnown RBP21.45■■□□□ 1.02
VPS29-206ENST00000549578 COILP38432 576 aaPredicted RBP21.45■■□□□ 1.02
VPS29-206ENST00000549578 METAP1P53582 386 aa21.45■■□□□ 1.02
VPS29-206ENST00000549578 AP1S1P61966 158 aa21.45■■□□□ 1.02
VPS29-206ENST00000549578 NCEH1Q6PIU2 408 aa21.45■■□□□ 1.02
VPS29-206ENST00000549578 CCDC137Q6PK04 289 aaKnown RBP21.45■■□□□ 1.02
VPS29-206ENST00000549578 KIAA1324Q6UXG2 1013 aaKnown RBP21.45■■□□□ 1.02
VPS29-206ENST00000549578 DSG4Q86SJ6 1040 aa21.45■■□□□ 1.02
VPS29-206ENST00000549578 PGBD3Q8N328 593 aa21.45■■□□□ 1.02
VPS29-206ENST00000549578 GLIS1Q8NBF1 620 aa21.45■■□□□ 1.02
VPS29-206ENST00000549578 PIP4K2CQ8TBX8 421 aa21.45■■□□□ 1.02
VPS29-206ENST00000549578 RTP4Q96DX8 246 aa21.45■■□□□ 1.02
VPS29-206ENST00000549578 SPATA13Q96N96 652 aa21.45■■□□□ 1.02
VPS29-206ENST00000549578 PRMT8Q9NR22 394 aaPredicted RBP21.45■■□□□ 1.02
VPS29-206ENST00000549578 TRHDEQ9UKU6 1024 aa21.45■■□□□ 1.02
VPS29-206ENST00000549578 C5orf60A6NFR6 353 aa21.45■■□□□ 1.02
VPS29-206ENST00000549578 DLL1O00548 723 aa21.45■■□□□ 1.02
VPS29-206ENST00000549578 ALDH1A2O94788 518 aa21.45■■□□□ 1.02
VPS29-206ENST00000549578 PRNPP04156 253 aa21.45■■□□□ 1.02
VPS29-206ENST00000549578 UGT2B4P06133 528 aa21.45■■□□□ 1.02
VPS29-206ENST00000549578 ETS1P14921 441 aa21.45■■□□□ 1.02
VPS29-206ENST00000549578 RAD51Q06609 339 aa21.45■■□□□ 1.02
VPS29-206ENST00000549578 IHHQ14623 411 aa21.45■■□□□ 1.02
VPS29-206ENST00000549578 CST6Q15828 149 aa21.45■■□□□ 1.02
VPS29-206ENST00000549578 GSTA5Q7RTV2 222 aa21.45■■□□□ 1.02
VPS29-206ENST00000549578 MAML2Q8IZL2 1156 aaPredicted RBP21.45■■□□□ 1.02
VPS29-206ENST00000549578 PRCCQ92733 491 aaPredicted RBP21.45■■□□□ 1.02
VPS29-206ENST00000549578 SIPA1Q96FS4 1042 aa21.45■■□□□ 1.02
VPS29-206ENST00000549578 RSPH14Q9UHP6 348 aa21.45■■□□□ 1.02
VPS29-206ENST00000549578 MRFAP1Q9Y605 127 aa21.45■■□□□ 1.02
VPS29-206ENST00000549578 KPNA3O00505 521 aaPredicted RBP21.44■■□□□ 1.02
VPS29-206ENST00000549578 MID1O15344 667 aa21.44■■□□□ 1.02
VPS29-206ENST00000549578 OPHN1O60890 802 aa21.44■■□□□ 1.02
VPS29-206ENST00000549578 GCATO75600 419 aa21.44■■□□□ 1.02
VPS29-206ENST00000549578 MMP2P08253 660 aa21.44■■□□□ 1.02
VPS29-206ENST00000549578 CD86P42081 329 aa21.44■■□□□ 1.02
VPS29-206ENST00000549578 FNTAP49354 379 aa21.44■■□□□ 1.02
VPS29-206ENST00000549578 CAMK1DQ8IU85 385 aa21.44■■□□□ 1.02
VPS29-206ENST00000549578 KLHL7Q8IXQ5 586 aa21.44■■□□□ 1.02
VPS29-206ENST00000549578 CAMKK1Q8N5S9 505 aa21.44■■□□□ 1.02
VPS29-206ENST00000549578 TMIEQ8NEW7 156 aa21.44■■□□□ 1.02
VPS29-206ENST00000549578 ATL2Q8NHH9 583 aa21.44■■□□□ 1.02
VPS29-206ENST00000549578 IMP4Q96G21 291 aaKnown RBP21.44■■□□□ 1.02
VPS29-206ENST00000549578 SLC25A51Q9H1U9 297 aa21.44■■□□□ 1.02
VPS29-206ENST00000549578 GBA3Q9H227 469 aa21.44■■□□□ 1.02
VPS29-206ENST00000549578 ATP13A3Q9H7F0 1226 aa21.44■■□□□ 1.02
VPS29-206ENST00000549578 ANKRD36A6QL64 1941 aa21.43■■□□□ 1.02
VPS29-206ENST00000549578 C1QTNF3-AMACRE9PGA6 284 aa21.43■■□□□ 1.02
VPS29-206ENST00000549578 ZSCAN5DPP0CG00 497 aa21.43■■□□□ 1.02
VPS29-206ENST00000549578 SLC8A1P32418 973 aa21.43■■□□□ 1.02
VPS29-206ENST00000549578 MAPK8P45983 427 aa21.43■■□□□ 1.02
VPS29-206ENST00000549578 DMWDQ09019 674 aa21.43■■□□□ 1.02
VPS29-206ENST00000549578 WHAMMP3Q1A5X7 153 aa21.43■■□□□ 1.02
VPS29-206ENST00000549578 P3H1Q32P28 736 aa21.43■■□□□ 1.02
VPS29-206ENST00000549578 GDPD4Q6W3E5 623 aa21.43■■□□□ 1.02
VPS29-206ENST00000549578 ARHGEF18Q6ZSZ5 1173 aa21.43■■□□□ 1.02
VPS29-206ENST00000549578 RASSF3Q86WH2 238 aa21.43■■□□□ 1.02
VPS29-206ENST00000549578 CCDC89Q8N998 374 aa21.43■■□□□ 1.02
VPS29-206ENST00000549578 SPATA4Q8NEY3 305 aa21.43■■□□□ 1.02
VPS29-206ENST00000549578 SPATA22Q8NHS9 363 aa21.43■■□□□ 1.02
VPS29-206ENST00000549578 LRIG1Q96JA1 1093 aa21.43■■□□□ 1.02
VPS29-206ENST00000549578 TUBGCP5Q96RT8 1024 aa21.43■■□□□ 1.02
VPS29-206ENST00000549578 RBM15Q96T37 977 aaKnown RBP eCLIP21.43■■□□□ 1.02
VPS29-206ENST00000549578 CPEB1Q9BZB8 566 aaKnown RBP21.43■■□□□ 1.02
VPS29-206ENST00000549578 TPSD1Q9BZJ3 242 aa21.43■■□□□ 1.02
VPS29-206ENST00000549578 CD93Q9NPY3 652 aa21.43■■□□□ 1.02
VPS29-206ENST00000549578 PCDHGC4Q9Y5F7 938 aa21.43■■□□□ 1.02
VPS29-206ENST00000549578 CCDC188H7C350 402 aa21.42■■□□□ 1.02
VPS29-206ENST00000549578 ADH1BP00325 375 aa21.42■■□□□ 1.02
VPS29-206ENST00000549578 DNTTP04053 509 aa21.42■■□□□ 1.02
VPS29-206ENST00000549578 PSMB4P28070 264 aa21.42■■□□□ 1.02
VPS29-206ENST00000549578 SKOR1P84550 965 aa21.42■■□□□ 1.02
VPS29-206ENST00000549578 CSTF1Q05048 431 aaKnown RBP21.42■■□□□ 1.02
VPS29-206ENST00000549578 CKAP4Q07065 602 aaKnown RBP21.42■■□□□ 1.02
VPS29-206ENST00000549578 BCL2L1Q07817 233 aa21.42■■□□□ 1.02
VPS29-206ENST00000549578 C2orf54Q08AI8 447 aa21.42■■□□□ 1.02
VPS29-206ENST00000549578 RALGPS1Q5JS13 557 aa21.42■■□□□ 1.02
VPS29-206ENST00000549578 FAM46CQ5VWP2 391 aa21.42■■□□□ 1.02
VPS29-206ENST00000549578 ITPRIPL1Q6GPH6 555 aa21.42■■□□□ 1.02
VPS29-206ENST00000549578 PRPF39Q86UA1 669 aaKnown RBP21.42■■□□□ 1.02
VPS29-206ENST00000549578 TAB3Q8N5C8 712 aaPredicted RBP21.42■■□□□ 1.02
VPS29-206ENST00000549578 KLHL32Q96NJ5 620 aa21.42■■□□□ 1.02
VPS29-206ENST00000549578 LRFN3Q9BTN0 628 aa21.42■■□□□ 1.02
VPS29-206ENST00000549578 OSBPL1AQ9BXW6 950 aa21.42■■□□□ 1.02
VPS29-206ENST00000549578 UBP1Q9NZI7 540 aa21.42■■□□□ 1.02
VPS29-206ENST00000549578 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP21.41■■□□□ 1.02
VPS29-206ENST00000549578 PLK4O00444 970 aa21.41■■□□□ 1.02
VPS29-206ENST00000549578 MT-CYBP00156 380 aaPredicted RBP21.41■■□□□ 1.02
VPS29-206ENST00000549578 SERPINF2P08697 491 aa21.41■■□□□ 1.02
VPS29-206ENST00000549578 TDGF1P13385 188 aa21.41■■□□□ 1.02
VPS29-206ENST00000549578 CES1P23141 567 aa21.41■■□□□ 1.02
VPS29-206ENST00000549578 SERPINA4P29622 427 aa21.41■■□□□ 1.02
VPS29-206ENST00000549578 TRAF2Q12933 501 aa21.41■■□□□ 1.02
VPS29-206ENST00000549578 TUBB2AQ13885 445 aa21.41■■□□□ 1.02
VPS29-206ENST00000549578 GRM3Q14832 879 aa21.41■■□□□ 1.02
VPS29-206ENST00000549578 DNTTIP2Q5QJE6 756 aaKnown RBP21.41■■□□□ 1.02
VPS29-206ENST00000549578 ZNF572Q7Z3I7 529 aaPredicted RBP21.41■■□□□ 1.02
VPS29-206ENST00000549578 AADATQ8N5Z0 425 aa21.41■■□□□ 1.02
VPS29-206ENST00000549578 ARRDC3Q96B67 414 aa21.41■■□□□ 1.02
VPS29-206ENST00000549578 OXNAD1Q96HP4 312 aaPredicted RBP21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms