RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 PITPNM1O00562 1244 aa9.98□□□□□ -0.81
SS18-205ENST00000542420 FKBP6O75344 327 aa9.98□□□□□ -0.81
SS18-205ENST00000542420 HLA-DPA1P20036 260 aa9.98□□□□□ -0.81
SS18-205ENST00000542420 CES1P23141 567 aa9.98□□□□□ -0.81
SS18-205ENST00000542420 SERPINH1P50454 418 aaKnown RBP9.98□□□□□ -0.81
SS18-205ENST00000542420 NAA20P61599 178 aa9.98□□□□□ -0.81
SS18-205ENST00000542420 BTKQ06187 659 aa9.98□□□□□ -0.81
SS18-205ENST00000542420 USP10Q14694 798 aaKnown RBP9.98□□□□□ -0.81
SS18-205ENST00000542420 PPM1JQ5JR12 505 aa9.98□□□□□ -0.81
SS18-205ENST00000542420 TSTD2Q5T7W7 516 aa9.98□□□□□ -0.81
SS18-205ENST00000542420 MARC1Q5VT66 337 aa9.98□□□□□ -0.81
SS18-205ENST00000542420 CWF19L1Q69YN2 538 aaKnown RBP9.98□□□□□ -0.81
SS18-205ENST00000542420 ARHGAP36Q6ZRI8 547 aa9.98□□□□□ -0.81
SS18-205ENST00000542420 ZCCHC23Q6ZST2 131 aa9.98□□□□□ -0.81
SS18-205ENST00000542420 ANKS3Q6ZW76 656 aa9.98□□□□□ -0.81
SS18-205ENST00000542420 MICAL3Q7RTP6 2002 aa9.98□□□□□ -0.81
SS18-205ENST00000542420 TRIM74Q86UV6 250 aa9.98□□□□□ -0.81
SS18-205ENST00000542420 TRIM73Q86UV7 250 aa9.98□□□□□ -0.81
SS18-205ENST00000542420 TREML1Q86YW5 311 aa9.98□□□□□ -0.81
SS18-205ENST00000542420 SCUBE1Q8IWY4 988 aa9.98□□□□□ -0.81
SS18-205ENST00000542420 PLD6Q8N2A8 252 aaKnown RBP9.98□□□□□ -0.81
SS18-205ENST00000542420 CPSF7Q8N684 471 aaKnown RBP9.98□□□□□ -0.81
SS18-205ENST00000542420 FBXO32Q969P5 355 aa9.98□□□□□ -0.81
SS18-205ENST00000542420 FEM1CQ96JP0 617 aa9.98□□□□□ -0.81
SS18-205ENST00000542420 MFSD1Q9H3U5 465 aa9.98□□□□□ -0.81
SS18-205ENST00000542420 PIH1D1Q9NWS0 290 aaKnown RBP9.98□□□□□ -0.81
SS18-205ENST00000542420 RNF186Q9NXI6 227 aa9.98□□□□□ -0.81
SS18-205ENST00000542420 STX18Q9P2W9 335 aaKnown RBP9.98□□□□□ -0.81
SS18-205ENST00000542420 ANGPTL2Q9UKU9 493 aa9.98□□□□□ -0.81
SS18-205ENST00000542420 ABT1Q9ULW3 272 aaKnown RBP9.98□□□□□ -0.81
SS18-205ENST00000542420 LOC285095A0A1B0GVY8 99 aa9.97□□□□□ -0.81
SS18-205ENST00000542420 FAM95CA0A1B0GW59 222 aa9.97□□□□□ -0.81
SS18-205ENST00000542420 A0A1W2PQ45 241 aaPredicted RBP9.97□□□□□ -0.81
SS18-205ENST00000542420 A0A1W2PQY0 241 aa9.97□□□□□ -0.81
SS18-205ENST00000542420 MSI1O43347 362 aaKnown RBP9.97□□□□□ -0.81
SS18-205ENST00000542420 AHSGP02765 367 aa9.97□□□□□ -0.81
SS18-205ENST00000542420 SLC35E2BP0CK96 405 aa9.97□□□□□ -0.81
SS18-205ENST00000542420 PSMA3P25788 255 aa9.97□□□□□ -0.81
SS18-205ENST00000542420 ARNTP27540 789 aa9.97□□□□□ -0.81
SS18-205ENST00000542420 WNT3AP56704 352 aa9.97□□□□□ -0.81
SS18-205ENST00000542420 RFTN1Q14699 578 aaPredicted RBP9.97□□□□□ -0.81
SS18-205ENST00000542420 LRRC8EQ6NSJ5 796 aa9.97□□□□□ -0.81
SS18-205ENST00000542420 PIWIL4Q7Z3Z4 852 aaKnown RBP9.97□□□□□ -0.81
SS18-205ENST00000542420 C14orf80Q86SX3 495 aa9.97□□□□□ -0.81
SS18-205ENST00000542420 TTC7BQ86TV6 843 aa9.97□□□□□ -0.81
SS18-205ENST00000542420 APLFQ8IW19 511 aaPredicted RBP9.97□□□□□ -0.81
SS18-205ENST00000542420 ABI1Q8IZP0 508 aa9.97□□□□□ -0.81
SS18-205ENST00000542420 BBS5Q8N3I7 341 aa9.97□□□□□ -0.81
SS18-205ENST00000542420 TMEM151AQ8N4L1 468 aa9.97□□□□□ -0.81
SS18-205ENST00000542420 ZNF513Q8N8E2 541 aaPredicted RBP9.97□□□□□ -0.81
SS18-205ENST00000542420 NETO2Q8NC67 525 aa9.97□□□□□ -0.81
SS18-205ENST00000542420 GPR150Q8NGU9 434 aa9.97□□□□□ -0.81
SS18-205ENST00000542420 SEPT8Q92599 483 aa9.97□□□□□ -0.81
SS18-205ENST00000542420 JADE3Q92613 823 aa9.97□□□□□ -0.81
SS18-205ENST00000542420 MRPL46Q9H2W6 279 aaKnown RBP9.97□□□□□ -0.81
SS18-205ENST00000542420 SP110Q9HB58 689 aa9.97□□□□□ -0.81
SS18-205ENST00000542420 STARD7Q9NQZ5 370 aa9.97□□□□□ -0.81
SS18-205ENST00000542420 NDE1Q9NXR1 346 aa9.97□□□□□ -0.81
SS18-205ENST00000542420 GMIPQ9P107 970 aa9.97□□□□□ -0.81
SS18-205ENST00000542420 FBXO5Q9UKT4 447 aa9.97□□□□□ -0.81
SS18-205ENST00000542420 SLC39A10Q9ULF5 831 aa9.97□□□□□ -0.81
SS18-205ENST00000542420 PCDHB7Q9Y5E2 793 aa9.97□□□□□ -0.81
SS18-205ENST00000542420 MTMR11A4FU01 709 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 MROH6A6NGR9 719 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 MATN2O00339 956 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 HDAC3O15379 428 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 B4GALT3O60512 393 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 CCNT2O60583 730 aaKnown RBP9.96□□□□□ -0.81
SS18-205ENST00000542420 PSMG1O95456 288 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 ALDH2P05091 517 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 FGF1P05230 155 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 ENO1P06733 434 aaKnown RBP9.96□□□□□ -0.81
SS18-205ENST00000542420 RBP1P09455 135 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 ACADSP16219 412 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 GLDCP23378 1020 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 CDC25CP30307 473 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 VHLP40337 213 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 ABL2P42684 1182 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 COPAP53621 1224 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 MSLNQ13421 630 aaPredicted RBP9.96□□□□□ -0.81
SS18-205ENST00000542420 OLIG2Q13516 323 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 BLMHQ13867 455 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 CFAP157Q5JU67 520 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 NEPROQ6NW34 567 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 RAPH1Q70E73 1250 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 MFN1Q8IWA4 741 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 AFAP1L2Q8N4X5 818 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 RBM15BQ8NDT2 890 aaKnown RBP9.96□□□□□ -0.81
SS18-205ENST00000542420 SPATA22Q8NHS9 363 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 USP33Q8TEY7 942 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 STMN2Q93045 179 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 CASD1Q96PB1 797 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 RTKNQ9BST9 563 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 TRMOQ9BU70 441 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 GATA5Q9BWX5 397 aaPredicted RBP9.96□□□□□ -0.81
SS18-205ENST00000542420 MAGEH1Q9H213 219 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 TASP1Q9H6P5 420 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 MARCH2Q9P0N8 246 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 L3MBTL1Q9Y468 752 aa9.96□□□□□ -0.81
SS18-205ENST00000542420 BACE2Q9Y5Z0 518 aa9.96□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms