RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 DKK3Q9UBP4 350 aa17.75■□□□□ 0.43
CLSTN3-210ENST00000540931 LHX3Q9UBR4 397 aa17.75■□□□□ 0.43
CLSTN3-210ENST00000540931 ATP8A1Q9Y2Q0 1164 aa17.75■□□□□ 0.43
CLSTN3-210ENST00000540931 WDR87Q6ZQQ6 2873 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 ZNF292O60281 2723 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 KRIT1O00522 736 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 INSIG1O15503 277 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 OPHN1O60890 802 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 JCHAINP01591 159 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 IGLV3-19P01714 112 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 ITGAVP06756 1048 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 NDUFV2P19404 249 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 ITGB7P26010 798 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 CXCR5P32302 372 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 SLC8A1P32418 973 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 SCNN1BP51168 640 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 RPS14P62263 151 aaKnown RBP17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 ITKQ08881 620 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 LLGL1Q15334 1064 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 ZNF805Q5CZA5 627 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 GDPD4Q6W3E5 623 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 TP53INP2Q8IXH6 220 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 PIP4K2CQ8TBX8 421 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 GRK7Q8WTQ7 553 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 NELL1Q92832 810 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 TEKT5Q96M29 485 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 HHIPQ96QV1 700 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 SRPK1Q96SB4 655 aaKnown RBP17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 OMDQ99983 421 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 HDAC8Q9BY41 377 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 MKRN2Q9H000 416 aaKnown RBP17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 TNKS2Q9H2K2 1166 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 PABPC3Q9H361 631 aaKnown RBP17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 SEMA4AQ9H3S1 761 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 ZDHHC6Q9H6R6 413 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 SGK2Q9HBY8 427 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 ZDHHC4Q9NPG8 344 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 VPS45Q9NRW7 570 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 ZNF148Q9UQR1 794 aa17.74■□□□□ 0.43
CLSTN3-210ENST00000540931 NYNRINQ9P2P1 1898 aaKnown RBP17.73■□□□□ 0.43
CLSTN3-210ENST00000540931 ATG2BQ96BY7 2078 aa17.73■□□□□ 0.43
CLSTN3-210ENST00000540931 KCNK1O00180 336 aa17.73■□□□□ 0.43
CLSTN3-210ENST00000540931 LIASO43766 372 aa17.73■□□□□ 0.43
CLSTN3-210ENST00000540931 MAP3K6O95382 1288 aa17.73■□□□□ 0.43
CLSTN3-210ENST00000540931 ID4P47928 161 aa17.73■□□□□ 0.43
CLSTN3-210ENST00000540931 RPL26P61254 145 aaKnown RBP17.73■□□□□ 0.43
CLSTN3-210ENST00000540931 PRPSAP1Q14558 356 aa17.73■□□□□ 0.43
CLSTN3-210ENST00000540931 P3H1Q32P28 736 aa17.73■□□□□ 0.43
CLSTN3-210ENST00000540931 AADACL2Q6P093 401 aa17.73■□□□□ 0.43
CLSTN3-210ENST00000540931 KIAA1324Q6UXG2 1013 aaKnown RBP17.73■□□□□ 0.43
CLSTN3-210ENST00000540931 MMAAQ8IVH4 418 aaKnown RBP17.73■□□□□ 0.43
CLSTN3-210ENST00000540931 ZNF366Q8N895 744 aa17.73■□□□□ 0.43
CLSTN3-210ENST00000540931 MDGA1Q8NFP4 955 aa17.73■□□□□ 0.43
CLSTN3-210ENST00000540931 SLC25A51Q9H1U9 297 aa17.73■□□□□ 0.43
CLSTN3-210ENST00000540931 NT5MQ9NPB1 228 aa17.73■□□□□ 0.43
CLSTN3-210ENST00000540931 SEPT10Q9P0V9 454 aa17.73■□□□□ 0.43
CLSTN3-210ENST00000540931 USP36Q9P275 1121 aaKnown RBP17.73■□□□□ 0.43
CLSTN3-210ENST00000540931 KLHL8Q9P2G9 620 aaPredicted RBP17.73■□□□□ 0.43
CLSTN3-210ENST00000540931 DNPEPQ9ULA0 475 aa17.73■□□□□ 0.43
CLSTN3-210ENST00000540931 RPL26L1Q9UNX3 145 aaKnown RBP17.73■□□□□ 0.43
CLSTN3-210ENST00000540931 C5orf60A6NFR6 353 aa17.72■□□□□ 0.43
CLSTN3-210ENST00000540931 CCDC188H7C350 402 aa17.72■□□□□ 0.43
CLSTN3-210ENST00000540931 KPNA3O00505 521 aaPredicted RBP17.72■□□□□ 0.43
CLSTN3-210ENST00000540931 KCNN4O15554 427 aa17.72■□□□□ 0.43
CLSTN3-210ENST00000540931 PSMD3O43242 534 aa17.72■□□□□ 0.43
CLSTN3-210ENST00000540931 LEFTY1O75610 366 aa17.72■□□□□ 0.43
CLSTN3-210ENST00000540931 ANXA9O76027 345 aa17.72■□□□□ 0.43
CLSTN3-210ENST00000540931 SP9P0CG40 484 aa17.72■□□□□ 0.43
CLSTN3-210ENST00000540931 TDGF1P13385 188 aa17.72■□□□□ 0.43
CLSTN3-210ENST00000540931 CR2P20023 1033 aa17.72■□□□□ 0.43
CLSTN3-210ENST00000540931 PTPN3P26045 913 aa17.72■□□□□ 0.43
CLSTN3-210ENST00000540931 NUDT1P36639 197 aa17.72■□□□□ 0.43
CLSTN3-210ENST00000540931 DPP6P42658 865 aa17.72■□□□□ 0.43
CLSTN3-210ENST00000540931 ARSIQ5FYB1 569 aa17.72■□□□□ 0.43
CLSTN3-210ENST00000540931 CCDC70Q6NSX1 233 aa17.72■□□□□ 0.43
CLSTN3-210ENST00000540931 NEK5Q6P3R8 708 aa17.72■□□□□ 0.43
CLSTN3-210ENST00000540931 SYT10Q6XYQ8 523 aa17.72■□□□□ 0.43
CLSTN3-210ENST00000540931 LEKR1Q6ZMV7 388 aa17.72■□□□□ 0.43
CLSTN3-210ENST00000540931 PID1Q7Z2X4 250 aa17.72■□□□□ 0.43
CLSTN3-210ENST00000540931 PAF1Q8N7H5 531 aa17.72■□□□□ 0.43
CLSTN3-210ENST00000540931 C12orf50Q8NA57 414 aaPredicted RBP17.72■□□□□ 0.43
CLSTN3-210ENST00000540931 ZBTB44Q8NCP5 570 aa17.72■□□□□ 0.43
CLSTN3-210ENST00000540931 ATL2Q8NHH9 583 aa17.72■□□□□ 0.43
CLSTN3-210ENST00000540931 KIF18AQ8NI77 898 aa17.72■□□□□ 0.43
CLSTN3-210ENST00000540931 GANCQ8TET4 914 aa17.72■□□□□ 0.43
CLSTN3-210ENST00000540931 C16orf45Q96MC5 204 aaPredicted RBP17.72■□□□□ 0.43
CLSTN3-210ENST00000540931 BTBD1Q9H0C5 482 aa17.72■□□□□ 0.43
CLSTN3-210ENST00000540931 SUV39H2Q9H5I1 410 aa17.72■□□□□ 0.43
CLSTN3-210ENST00000540931 AAR2Q9Y312 384 aaKnown RBP17.72■□□□□ 0.43
CLSTN3-210ENST00000540931 WASF2Q9Y6W5 498 aa17.72■□□□□ 0.43
CLSTN3-210ENST00000540931 LRRC72A6NJI9 287 aa17.71■□□□□ 0.43
CLSTN3-210ENST00000540931 RNF103O00237 685 aa17.71■□□□□ 0.43
CLSTN3-210ENST00000540931 GCATO75600 419 aa17.71■□□□□ 0.43
CLSTN3-210ENST00000540931 XPAP23025 273 aaPredicted RBP17.71■□□□□ 0.43
CLSTN3-210ENST00000540931 RBL1P28749 1068 aa17.71■□□□□ 0.43
CLSTN3-210ENST00000540931 PSMD8P48556 350 aa17.71■□□□□ 0.43
CLSTN3-210ENST00000540931 FNTAP49354 379 aa17.71■□□□□ 0.43
CLSTN3-210ENST00000540931 NUMBP49757 651 aa17.71■□□□□ 0.43
CLSTN3-210ENST00000540931 NEK3P51956 506 aa17.71■□□□□ 0.43
CLSTN3-210ENST00000540931 ELP6Q0PNE2 266 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms