RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 LMX1AQ8TE12 382 aa13.79□□□□□ -0.2
SS18-204ENST00000539244 ARHGEF2Q92974 986 aaKnown RBP13.79□□□□□ -0.2
SS18-204ENST00000539244 CCDC97Q96F63 343 aaPredicted RBP13.79□□□□□ -0.2
SS18-204ENST00000539244 ATXN7L3BQ96GX2 97 aa13.79□□□□□ -0.2
SS18-204ENST00000539244 NAA15Q9BXJ9 866 aaKnown RBP13.79□□□□□ -0.2
SS18-204ENST00000539244 OSBPL1AQ9BXW6 950 aa13.79□□□□□ -0.2
SS18-204ENST00000539244 TM6SF2Q9BZW4 377 aa13.79□□□□□ -0.2
SS18-204ENST00000539244 PDCL3Q9H2J4 239 aa13.79□□□□□ -0.2
SS18-204ENST00000539244 NDST4Q9H3R1 872 aa13.79□□□□□ -0.2
SS18-204ENST00000539244 SPASTQ9UBP0 616 aa13.79□□□□□ -0.2
SS18-204ENST00000539244 GGT7Q9UJ14 662 aa13.79□□□□□ -0.2
SS18-204ENST00000539244 NEU3Q9UQ49 428 aa13.79□□□□□ -0.2
SS18-204ENST00000539244 CPED1A4D0V7 1026 aa13.78□□□□□ -0.2
SS18-204ENST00000539244 LMO7DNF2Z398 122 aa13.78□□□□□ -0.2
SS18-204ENST00000539244 TOR1BO14657 336 aa13.78□□□□□ -0.2
SS18-204ENST00000539244 RHOQP17081 205 aa13.78□□□□□ -0.2
SS18-204ENST00000539244 RBMS1P29558 406 aaKnown RBP13.78□□□□□ -0.2
SS18-204ENST00000539244 ACVRL1P37023 503 aa13.78□□□□□ -0.2
SS18-204ENST00000539244 RPIAP49247 311 aa13.78□□□□□ -0.2
SS18-204ENST00000539244 SNRPD1P62314 119 aaKnown RBP13.78□□□□□ -0.2
SS18-204ENST00000539244 YPEL5P62699 121 aa13.78□□□□□ -0.2
SS18-204ENST00000539244 NOMO3P69849 1222 aa13.78□□□□□ -0.2
SS18-204ENST00000539244 RAPGEF1Q13905 1077 aa13.78□□□□□ -0.2
SS18-204ENST00000539244 POLD3Q15054 466 aaPredicted RBP13.78□□□□□ -0.2
SS18-204ENST00000539244 VWA3BQ502W6 1294 aa13.78□□□□□ -0.2
SS18-204ENST00000539244 C2CD6Q53TS8 623 aa13.78□□□□□ -0.2
SS18-204ENST00000539244 PERM1Q5SV97 790 aa13.78□□□□□ -0.2
SS18-204ENST00000539244 C6orf132Q5T0Z8 1188 aa13.78□□□□□ -0.2
SS18-204ENST00000539244 KLHDC7AQ5VTJ3 777 aa13.78□□□□□ -0.2
SS18-204ENST00000539244 CLEC14AQ86T13 490 aa13.78□□□□□ -0.2
SS18-204ENST00000539244 NAT6Q93015 286 aa13.78□□□□□ -0.2
SS18-204ENST00000539244 MAGEH1Q9H213 219 aa13.78□□□□□ -0.2
SS18-204ENST00000539244 NDFIP2Q9NV92 336 aa13.78□□□□□ -0.2
SS18-204ENST00000539244 TMEM248Q9NWD8 314 aa13.78□□□□□ -0.2
SS18-204ENST00000539244 OR12D3Q9UGF7 316 aa13.78□□□□□ -0.2
SS18-204ENST00000539244 APOBEC3BQ9UH17 382 aaKnown RBP13.78□□□□□ -0.2
SS18-204ENST00000539244 PNMA8BQ9ULN7 279 aaPredicted RBP13.78□□□□□ -0.2
SS18-204ENST00000539244 ITM2BQ9Y287 266 aa13.78□□□□□ -0.2
SS18-204ENST00000539244 FHOD1Q9Y613 1164 aa13.78□□□□□ -0.2
SS18-204ENST00000539244 GOLGA8SH3BPF8 625 aa13.77□□□□□ -0.21
SS18-204ENST00000539244 J3QKU1 62 aa13.77□□□□□ -0.21
SS18-204ENST00000539244 K7ENP7 123 aa13.77□□□□□ -0.21
SS18-204ENST00000539244 NEMP1O14524 444 aa13.77□□□□□ -0.21
SS18-204ENST00000539244 GCATO75600 419 aa13.77□□□□□ -0.21
SS18-204ENST00000539244 POP4O95707 220 aaKnown RBP13.77□□□□□ -0.21
SS18-204ENST00000539244 GKP32189 559 aa13.77□□□□□ -0.21
SS18-204ENST00000539244 ADRA1BP35368 520 aa13.77□□□□□ -0.21
SS18-204ENST00000539244 IGFALSP35858 605 aa13.77□□□□□ -0.21
SS18-204ENST00000539244 THOP1P52888 689 aa13.77□□□□□ -0.21
SS18-204ENST00000539244 PDX1P52945 283 aa13.77□□□□□ -0.21
SS18-204ENST00000539244 C1QBPQ07021 282 aaKnown RBP13.77□□□□□ -0.21
SS18-204ENST00000539244 PRRT3Q5FWE3 981 aa13.77□□□□□ -0.21
SS18-204ENST00000539244 TAF3Q5VWG9 929 aa13.77□□□□□ -0.21
SS18-204ENST00000539244 INO80CQ6PI98 192 aaPredicted RBP13.77□□□□□ -0.21
SS18-204ENST00000539244 MACC1Q6ZN28 852 aa13.77□□□□□ -0.21
SS18-204ENST00000539244 NOP9Q86U38 636 aaKnown RBP13.77□□□□□ -0.21
SS18-204ENST00000539244 FAM114A1Q8IWE2 563 aa13.77□□□□□ -0.21
SS18-204ENST00000539244 SLC35F3Q8IY50 421 aa13.77□□□□□ -0.21
SS18-204ENST00000539244 PHACTR4Q8IZ21 702 aa13.77□□□□□ -0.21
SS18-204ENST00000539244 RBFAQ8N0V3 343 aa13.77□□□□□ -0.21
SS18-204ENST00000539244 OR6K2Q8NGY2 324 aa13.77□□□□□ -0.21
SS18-204ENST00000539244 WDR36Q8NI36 951 aaKnown RBP13.77□□□□□ -0.21
SS18-204ENST00000539244 EPS8L1Q8TE68 723 aa13.77□□□□□ -0.21
SS18-204ENST00000539244 GLMNQ92990 594 aa13.77□□□□□ -0.21
SS18-204ENST00000539244 TUBGCP2Q9BSJ2 902 aa13.77□□□□□ -0.21
SS18-204ENST00000539244 LRRC61Q9BV99 259 aa13.77□□□□□ -0.21
SS18-204ENST00000539244 TCEAL2Q9H3H9 227 aaPredicted RBP13.77□□□□□ -0.21
SS18-204ENST00000539244 ZSCAN5CA6NGD5 496 aaPredicted RBP13.76□□□□□ -0.21
SS18-204ENST00000539244 KRIT1O00522 736 aa13.76□□□□□ -0.21
SS18-204ENST00000539244 NTN3O00634 580 aaPredicted RBP13.76□□□□□ -0.21
SS18-204ENST00000539244 MUSKO15146 869 aa13.76□□□□□ -0.21
SS18-204ENST00000539244 UGT2B4P06133 528 aa13.76□□□□□ -0.21
SS18-204ENST00000539244 C6P13671 934 aa13.76□□□□□ -0.21
SS18-204ENST00000539244 UCHL3P15374 230 aa13.76□□□□□ -0.21
SS18-204ENST00000539244 ATP11AP98196 1134 aa13.76□□□□□ -0.21
SS18-204ENST00000539244 CAMK4Q16566 473 aa13.76□□□□□ -0.21
SS18-204ENST00000539244 TPD52L1Q16890 204 aaPredicted RBP13.76□□□□□ -0.21
SS18-204ENST00000539244 MYLK3Q32MK0 819 aa13.76□□□□□ -0.21
SS18-204ENST00000539244 ARL13BQ3SXY8 428 aa13.76□□□□□ -0.21
SS18-204ENST00000539244 RAB6CQ53S08 254 aa13.76□□□□□ -0.21
SS18-204ENST00000539244 STRADAQ7RTN6 431 aa13.76□□□□□ -0.21
SS18-204ENST00000539244 ZNF677Q86XU0 584 aa13.76□□□□□ -0.21
SS18-204ENST00000539244 RYBPQ8N488 228 aaPredicted RBP13.76□□□□□ -0.21
SS18-204ENST00000539244 ARL14Q8N4G2 192 aa13.76□□□□□ -0.21
SS18-204ENST00000539244 EMC1Q8N766 993 aa13.76□□□□□ -0.21
SS18-204ENST00000539244 CPA5Q8WXQ8 436 aa13.76□□□□□ -0.21
SS18-204ENST00000539244 KLHL32Q96NJ5 620 aa13.76□□□□□ -0.21
SS18-204ENST00000539244 STK33Q9BYT3 514 aa13.76□□□□□ -0.21
SS18-204ENST00000539244 SEMA4CQ9C0C4 833 aa13.76□□□□□ -0.21
SS18-204ENST00000539244 CLPBQ9H078 707 aa13.76□□□□□ -0.21
SS18-204ENST00000539244 RAB6CQ9H0N0 254 aa13.76□□□□□ -0.21
SS18-204ENST00000539244 METTL5Q9NRN9 209 aaKnown RBP13.76□□□□□ -0.21
SS18-204ENST00000539244 HPCAL4Q9UM19 191 aa13.76□□□□□ -0.21
SS18-204ENST00000539244 MFHAS1Q9Y4C4 1052 aa13.76□□□□□ -0.21
SS18-204ENST00000539244 CCDC187A0A096LP49 1063 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 F8VZ95 297 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 FAM72CH0Y354 149 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 KDELR3O43731 214 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 RAMP2O60895 175 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 TM7SF2O76062 418 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms