RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 TRPC5OSA6NMA1 111 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 C16orf96A6NNT2 1141 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 TTC34A8MYJ7 566 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 EVPLLA8MZ36 301 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 FAM86B1E9PN63 330 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 VWA5AO00534 786 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 XPO1O14980 1071 aaKnown RBP6.78□□□□□ -1.32
USP28-207ENST00000538475 HDAC3O15379 428 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 TREHO43280 583 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 DCXO43602 365 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 NUAK1O60285 661 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 CST8O60676 142 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 GAS7O60861 476 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 RNASEH2AO75792 299 aaKnown RBP6.78□□□□□ -1.32
USP28-207ENST00000538475 SEC14L2O76054 403 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 ENDOD1O94919 500 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 ATE1O95260 518 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 DLGAP3O95886 979 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 ERBB2P04626 1255 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 MPOP05164 745 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 FAM86B2P0C5J1 330 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 KITP10721 976 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 KRT3P12035 628 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 NCAM1P13591 858 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 KRT10P13645 584 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 ETS1P14921 441 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 ATF3P18847 181 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 XRCC1P18887 633 aaPredicted RBP6.78□□□□□ -1.32
USP28-207ENST00000538475 TGM2P21980 687 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 MAP4P27816 1152 aaKnown RBP6.78□□□□□ -1.32
USP28-207ENST00000538475 IL12AP29459 219 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 GRK3P35626 688 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 BTDP43251 543 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 MAGEA12P43365 314 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 MAPK8P45983 427 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 LEPRP48357 1165 aaKnown RBP6.78□□□□□ -1.32
USP28-207ENST00000538475 POLD2P49005 469 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 NUDT2P50583 147 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 ZNF157P51786 506 aaPredicted RBP6.78□□□□□ -1.32
USP28-207ENST00000538475 FCGRTP55899 365 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 EIF3EP60228 445 aaKnown RBP6.78□□□□□ -1.32
USP28-207ENST00000538475 YWHAZP63104 245 aaKnown RBP6.78□□□□□ -1.32
USP28-207ENST00000538475 TUBA1BP68363 451 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 ROR1Q01973 937 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 CYP4A11Q02928 519 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 CYP24A1Q07973 514 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 FSTL1Q12841 308 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 PRKAA1Q13131 559 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 TOP3AQ13472 1001 aaPredicted RBP6.78□□□□□ -1.32
USP28-207ENST00000538475 CEACAM7Q14002 265 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 PCLAFQ15004 111 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 NOMO1Q15155 1222 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 KCTD19Q17RG1 926 aaPredicted RBP6.78□□□□□ -1.32
USP28-207ENST00000538475 SLC36A3Q495N2 470 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 SAMD4BQ5PRF9 694 aaKnown RBP6.78□□□□□ -1.32
USP28-207ENST00000538475 CCNYL2Q5T2Q4 361 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 GJC2Q5T442 439 aaPredicted RBP6.78□□□□□ -1.32
USP28-207ENST00000538475 TMTC4Q5T4D3 741 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 ZFYVE27Q5T4F4 411 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 ZNF618Q5T7W0 954 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 MFSD4BQ5TF39 518 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 FAM45BPQ6NSW5 357 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 DNAJC24Q6P3W2 148 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 INTS5Q6P9B9 1019 aaKnown RBP6.78□□□□□ -1.32
USP28-207ENST00000538475 DCUN1D2Q6PH85 259 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 USP17L6PQ6QN14 398 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 TUBA1AQ71U36 451 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 ERMP1Q7Z2K6 904 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 HEATR4Q86WZ0 1026 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 ANKRD13BQ86YJ7 626 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 HACE1Q8IYU2 909 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 DAW1Q8N136 415 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 SFRP1Q8N474 314 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 GALNT4Q8N4A0 578 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 SLC4A11Q8NBS3 891 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 TMEM35BQ8NCS4 154 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 GMCL1P1Q8NEA9 526 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 OR7G1Q8NGA0 311 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 LILRB4Q8NHJ6 448 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 FAM45AQ8TCE6 357 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 ATL1Q8WXF7 558 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 CPA5Q8WXQ8 436 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 FAR2Q96K12 515 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 RDH12Q96NR8 316 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 LENG8Q96PV6 779 aaPredicted RBP6.78□□□□□ -1.32
USP28-207ENST00000538475 ALPK1Q96QP1 1244 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 FAM83CQ9BQN1 747 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 C11orf70Q9BRQ4 267 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 CNPY3Q9BT09 278 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 MECRQ9BV79 373 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 FTHL17Q9BXU8 183 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 OR2B2Q9GZK3 357 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 C20orf27Q9GZN8 174 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 DNAI2Q9GZS0 605 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 DEFB129Q9H1M3 183 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 C12orf65Q9H3J6 166 aaKnown RBP6.78□□□□□ -1.32
USP28-207ENST00000538475 RAD21L1Q9H4I0 556 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 SMARCAD1Q9H4L7 1026 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 EHD1Q9H4M9 534 aa6.78□□□□□ -1.32
USP28-207ENST00000538475 ZFP64Q9NPA5 681 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms