RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	SBNO1	A3KN83	1393 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	MYOM2	P54296	1465 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	LRRC9	Q6ZRR7	1453 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	GOLGA8Q	A0A0J9YX86	632 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	GOLGA8O	A6NCC3	632 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	MAGEA13P	A6NCF6	341 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110		E9PBE3	544 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	GOLGA8N	F8WBI6	632 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	INO80B-WBP1	J3KQ70	363 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	SLC16A3	O15427	465 aa	Known RBP	5.78	□□□□□ -1.48
CD44-231	ENST00000531110	PPIP5K2	O43314	1243 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	ZBTB14	O43829	449 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	RANBP6	O60518	1105 aa	Known RBP	5.78	□□□□□ -1.48
CD44-231	ENST00000531110	FGF18	O76093	207 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	DDHD2	O94830	711 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	SEC31A	O94979	1220 aa	Known RBP	5.78	□□□□□ -1.48
CD44-231	ENST00000531110	OR5F1	O95221	314 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	PABPC4L	P0CB38	370 aa	Known RBP	5.78	□□□□□ -1.48
CD44-231	ENST00000531110	TMOD1	P28289	359 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	CXCR5	P32302	372 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	TMED10	P49755	219 aa	Known RBP	5.78	□□□□□ -1.48
CD44-231	ENST00000531110	ADAR	P55265	1226 aa	Known RBP	5.78	□□□□□ -1.48
CD44-231	ENST00000531110	RPL26	P61254	145 aa	Known RBP	5.78	□□□□□ -1.48
CD44-231	ENST00000531110	SIM1	P81133	766 aa	Predicted RBP	5.78	□□□□□ -1.48
CD44-231	ENST00000531110	GFPT1	Q06210	699 aa	Predicted RBP	5.78	□□□□□ -1.48
CD44-231	ENST00000531110	DCTN2	Q13561	401 aa	Known RBP	5.78	□□□□□ -1.48
CD44-231	ENST00000531110	IQGAP2	Q13576	1575 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	BMPR2	Q13873	1038 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	PDE1C	Q14123	709 aa	Predicted RBP	5.78	□□□□□ -1.48
CD44-231	ENST00000531110	STK11	Q15831	433 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	IMMT	Q16891	758 aa	Known RBP	5.78	□□□□□ -1.48
CD44-231	ENST00000531110	GLE1	Q53GS7	698 aa	Known RBP	5.78	□□□□□ -1.48
CD44-231	ENST00000531110	PLA1A	Q53H76	456 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	ANKRD20A8P	Q5CZ79	823 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	PLAC9	Q5JTB6	97 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	ANKRD20A2	Q5SQ80	823 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	ZNF362	Q5T0B9	420 aa	Predicted RBP	5.78	□□□□□ -1.48
CD44-231	ENST00000531110	ANKRD20A1	Q5TYW2	823 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	C12orf60	Q5U649	245 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	DCAF12L1	Q5VU92	463 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	ANKRD20A3	Q5VUR7	823 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	TRIM65	Q6PJ69	517 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	KDM7A	Q6ZMT4	941 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	SSH2	Q76I76	1423 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	GRASP	Q7Z6J2	395 aa	Predicted RBP	5.78	□□□□□ -1.48
CD44-231	ENST00000531110	VPS52	Q8N1B4	723 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	NUP93	Q8N1F7	819 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	BBS5	Q8N3I7	341 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	TMCO5A	Q8N6Q1	288 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	OR8H1	Q8NGG4	311 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	OR56A3	Q8NH54	315 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	FNDC8	Q8TC99	324 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	RFK	Q969G6	155 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	ZNF274	Q96GC6	653 aa	Predicted RBP	5.78	□□□□□ -1.48
CD44-231	ENST00000531110	REXO5	Q96IC2	774 aa	Known RBP	5.78	□□□□□ -1.48
CD44-231	ENST00000531110	COQ7	Q99807	217 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	CTRC	Q99895	268 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	SIKE1	Q9BRV8	207 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	COLEC11	Q9BWP8	271 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	SPATA16	Q9BXB7	569 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	NDEL1	Q9GZM8	345 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	NDST4	Q9H3R1	872 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	SLITRK6	Q9H5Y7	841 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	MOV10	Q9HCE1	1003 aa	Known RBP	5.78	□□□□□ -1.48
CD44-231	ENST00000531110	PALMD	Q9NP74	551 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	SERHL	Q9NQF3	203 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	CNGB3	Q9NQW8	809 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	C8orf4	Q9NR00	106 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	POLE3	Q9NRF9	147 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	SACM1L	Q9NTJ5	587 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	GID8	Q9NWU2	228 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	EHD2	Q9NZN4	543 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	TMEM5	Q9Y2B1	443 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	LRCH1	Q9Y2L9	728 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	HBS1L	Q9Y450	684 aa	Known RBP	5.78	□□□□□ -1.48
CD44-231	ENST00000531110	SLC4A4	Q9Y6R1	1079 aa		5.78	□□□□□ -1.48
CD44-231	ENST00000531110	ERCC6	Q03468	1493 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	LOC102723971	A0A1B0GUV8	181 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110		A0A1B0GVG6	124 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	ARHGAP10	A1A4S6	786 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	FRMD3	A2A2Y4	597 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	RASA4B	C9J798	803 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	ADM5	C9JUS6	153 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110		F8W810	466 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	KLHL2	O95198	593 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	DDX58	O95786	925 aa	Known RBP	5.77	□□□□□ -1.49
CD44-231	ENST00000531110	KRT18	P05783	430 aa	Known RBP	5.77	□□□□□ -1.49
CD44-231	ENST00000531110	PAEP	P09466	180 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	PDHB	P11177	359 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	KRT10	P13645	584 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	ZNF12	P17014	697 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	WT1	P19544	449 aa	Predicted RBP	5.77	□□□□□ -1.49
CD44-231	ENST00000531110	KCNA3	P22001	575 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	TYK2	P29597	1187 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	AXL	P30530	894 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	HPD	P32754	393 aa	Predicted RBP	5.77	□□□□□ -1.49
CD44-231	ENST00000531110	LONP1	P36776	959 aa	Known RBP	5.77	□□□□□ -1.49
CD44-231	ENST00000531110	PDE6C	P51160	858 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	AP3M2	P53677	418 aa		5.77	□□□□□ -1.49
CD44-231	ENST00000531110	MAPK10	P53779	464 aa		5.77	□□□□□ -1.49

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