RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 RYBPQ8N488 228 aaPredicted RBP23.94■■□□□ 1.42
CPSF1-202ENST00000527827 EMC1Q8N766 993 aa23.94■■□□□ 1.42
CPSF1-202ENST00000527827 MLKLQ8NB16 471 aa23.94■■□□□ 1.42
CPSF1-202ENST00000527827 SNRNP27Q8WVK2 155 aaKnown RBP23.94■■□□□ 1.42
CPSF1-202ENST00000527827 CPA5Q8WXQ8 436 aa23.94■■□□□ 1.42
CPSF1-202ENST00000527827 CENPTQ96BT3 561 aa23.94■■□□□ 1.42
CPSF1-202ENST00000527827 SLC46A1Q96NT5 459 aa23.94■■□□□ 1.42
CPSF1-202ENST00000527827 IL12RB2Q99665 862 aa23.94■■□□□ 1.42
CPSF1-202ENST00000527827 BOCQ9BWV1 1114 aa23.94■■□□□ 1.42
CPSF1-202ENST00000527827 NAA15Q9BXJ9 866 aaKnown RBP23.94■■□□□ 1.42
CPSF1-202ENST00000527827 PMS2P1A4D2B8 440 aa23.93■■□□□ 1.42
CPSF1-202ENST00000527827 NEMP1O14524 444 aa23.93■■□□□ 1.42
CPSF1-202ENST00000527827 CASC3O15234 703 aaKnown RBP23.93■■□□□ 1.42
CPSF1-202ENST00000527827 GSRP00390 522 aa23.93■■□□□ 1.42
CPSF1-202ENST00000527827 NOMO3P69849 1222 aa23.93■■□□□ 1.42
CPSF1-202ENST00000527827 NRG1Q02297 640 aaPredicted RBP23.93■■□□□ 1.42
CPSF1-202ENST00000527827 NR0B2Q15466 257 aa23.93■■□□□ 1.42
CPSF1-202ENST00000527827 TPD52L1Q16890 204 aaPredicted RBP23.93■■□□□ 1.42
CPSF1-202ENST00000527827 RBM44Q6ZP01 1051 aaKnown RBP23.93■■□□□ 1.42
CPSF1-202ENST00000527827 OR2AP1Q8NGE2 309 aa23.93■■□□□ 1.42
CPSF1-202ENST00000527827 TPCN2Q8NHX9 752 aa23.93■■□□□ 1.42
CPSF1-202ENST00000527827 BTN2A2Q8WVV5 523 aa23.93■■□□□ 1.42
CPSF1-202ENST00000527827 GRAMD1AQ96CP6 724 aa23.93■■□□□ 1.42
CPSF1-202ENST00000527827 TUBGCP2Q9BSJ2 902 aa23.93■■□□□ 1.42
CPSF1-202ENST00000527827 MAGEB5Q9BZ81 275 aa23.93■■□□□ 1.42
CPSF1-202ENST00000527827 METTL5Q9NRN9 209 aaKnown RBP23.93■■□□□ 1.42
CPSF1-202ENST00000527827 SPASTQ9UBP0 616 aa23.93■■□□□ 1.42
CPSF1-202ENST00000527827 OR12D3Q9UGF7 316 aa23.93■■□□□ 1.42
CPSF1-202ENST00000527827 NEU3Q9UQ49 428 aa23.93■■□□□ 1.42
CPSF1-202ENST00000527827 CAPN8A6NHC0 703 aa23.92■■□□□ 1.42
CPSF1-202ENST00000527827 FAM72CH0Y354 149 aa23.92■■□□□ 1.42
CPSF1-202ENST00000527827 KRIT1O00522 736 aa23.92■■□□□ 1.42
CPSF1-202ENST00000527827 AREL1O15033 823 aa23.92■■□□□ 1.42
CPSF1-202ENST00000527827 MUSKO15146 869 aa23.92■■□□□ 1.42
CPSF1-202ENST00000527827 UGT2B4P06133 528 aa23.92■■□□□ 1.42
CPSF1-202ENST00000527827 MMEP08473 750 aa23.92■■□□□ 1.42
CPSF1-202ENST00000527827 PRKCSHP14314 528 aaPredicted RBP23.92■■□□□ 1.42
CPSF1-202ENST00000527827 ADRA1BP35368 520 aa23.92■■□□□ 1.42
CPSF1-202ENST00000527827 IGFALSP35858 605 aa23.92■■□□□ 1.42
CPSF1-202ENST00000527827 ETFBP38117 255 aa23.92■■□□□ 1.42
CPSF1-202ENST00000527827 MAPKAPK2P49137 400 aa23.92■■□□□ 1.42
CPSF1-202ENST00000527827 C1QBPQ07021 282 aaKnown RBP23.92■■□□□ 1.42
CPSF1-202ENST00000527827 VAC14Q08AM6 782 aa23.92■■□□□ 1.42
CPSF1-202ENST00000527827 C1orf61Q13536 156 aa23.92■■□□□ 1.42
CPSF1-202ENST00000527827 FAM72AQ5TYM5 149 aa23.92■■□□□ 1.42
CPSF1-202ENST00000527827 NAA35Q5VZE5 725 aa23.92■■□□□ 1.42
CPSF1-202ENST00000527827 FAM72DQ6L9T8 149 aa23.92■■□□□ 1.42
CPSF1-202ENST00000527827 LEKR1Q6ZMV7 388 aa23.92■■□□□ 1.42
CPSF1-202ENST00000527827 FAM72BQ86X60 149 aa23.92■■□□□ 1.42
CPSF1-202ENST00000527827 SLC35F3Q8IY50 421 aa23.92■■□□□ 1.42
CPSF1-202ENST00000527827 MSANTD4Q8NCY6 345 aa23.92■■□□□ 1.42
CPSF1-202ENST00000527827 TTC9Q92623 222 aa23.92■■□□□ 1.42
CPSF1-202ENST00000527827 KLHL32Q96NJ5 620 aa23.92■■□□□ 1.42
CPSF1-202ENST00000527827 SEMA4CQ9C0C4 833 aa23.92■■□□□ 1.42
CPSF1-202ENST00000527827 TMEM248Q9NWD8 314 aa23.92■■□□□ 1.42
CPSF1-202ENST00000527827 APOBEC3BQ9UH17 382 aaKnown RBP23.92■■□□□ 1.42
CPSF1-202ENST00000527827 DNAI1Q9UI46 699 aa23.92■■□□□ 1.42
CPSF1-202ENST00000527827 PCDHGA8Q9Y5G5 932 aa23.92■■□□□ 1.42
CPSF1-202ENST00000527827 RHOQP17081 205 aa23.91■■□□□ 1.42
CPSF1-202ENST00000527827 RBMS1P29558 406 aaKnown RBP23.91■■□□□ 1.42
CPSF1-202ENST00000527827 ADKP55263 362 aaKnown RBP23.91■■□□□ 1.42
CPSF1-202ENST00000527827 GEMIN4P57678 1058 aaKnown RBP23.91■■□□□ 1.42
CPSF1-202ENST00000527827 SNRPD1P62314 119 aaKnown RBP23.91■■□□□ 1.42
CPSF1-202ENST00000527827 POLD3Q15054 466 aaPredicted RBP23.91■■□□□ 1.42
CPSF1-202ENST00000527827 C15orf59Q2T9L4 293 aaPredicted RBP23.91■■□□□ 1.42
CPSF1-202ENST00000527827 MYLK3Q32MK0 819 aa23.91■■□□□ 1.42
CPSF1-202ENST00000527827 PRRT3Q5FWE3 981 aa23.91■■□□□ 1.42
CPSF1-202ENST00000527827 RWDD4Q6NW29 188 aaKnown RBP23.91■■□□□ 1.42
CPSF1-202ENST00000527827 VPS36Q86VN1 386 aa23.91■■□□□ 1.42
CPSF1-202ENST00000527827 FAM114A1Q8IWE2 563 aa23.91■■□□□ 1.42
CPSF1-202ENST00000527827 PHACTR4Q8IZ21 702 aa23.91■■□□□ 1.42
CPSF1-202ENST00000527827 EPS8L1Q8TE68 723 aa23.91■■□□□ 1.42
CPSF1-202ENST00000527827 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP23.91■■□□□ 1.42
CPSF1-202ENST00000527827 LRRC61Q9BV99 259 aa23.91■■□□□ 1.42
CPSF1-202ENST00000527827 MAGEH1Q9H213 219 aa23.91■■□□□ 1.42
CPSF1-202ENST00000527827 RETREG1Q9H6L5 497 aa23.91■■□□□ 1.42
CPSF1-202ENST00000527827 LRRK1Q38SD2 2015 aa23.9■■□□□ 1.42
CPSF1-202ENST00000527827 CDRT15L2A8MXV6 281 aa23.9■■□□□ 1.42
CPSF1-202ENST00000527827 LMO7DNF2Z398 122 aa23.9■■□□□ 1.42
CPSF1-202ENST00000527827 TCEA3O75764 348 aa23.9■■□□□ 1.42
CPSF1-202ENST00000527827 POP4O95707 220 aaKnown RBP23.9■■□□□ 1.42
CPSF1-202ENST00000527827 UCHL3P15374 230 aa23.9■■□□□ 1.42
CPSF1-202ENST00000527827 THOP1P52888 689 aa23.9■■□□□ 1.42
CPSF1-202ENST00000527827 PDX1P52945 283 aa23.9■■□□□ 1.42
CPSF1-202ENST00000527827 PTK2BQ14289 1009 aa23.9■■□□□ 1.42
CPSF1-202ENST00000527827 CDO1Q16878 200 aa23.9■■□□□ 1.42
CPSF1-202ENST00000527827 CCDC14Q49A88 953 aa23.9■■□□□ 1.42
CPSF1-202ENST00000527827 HSP90AA4PQ58FG1 418 aa23.9■■□□□ 1.42
CPSF1-202ENST00000527827 LRRC73Q5JTD7 316 aa23.9■■□□□ 1.42
CPSF1-202ENST00000527827 C6orf132Q5T0Z8 1188 aa23.9■■□□□ 1.42
CPSF1-202ENST00000527827 ATXN7L2Q5T6C5 722 aaPredicted RBP23.9■■□□□ 1.42
CPSF1-202ENST00000527827 RXFP2Q8WXD0 754 aa23.9■■□□□ 1.42
CPSF1-202ENST00000527827 ARHGEF26Q96DR7 871 aa23.9■■□□□ 1.42
CPSF1-202ENST00000527827 TBATAQ96M53 351 aa23.9■■□□□ 1.42
CPSF1-202ENST00000527827 OSBPL1AQ9BXW6 950 aa23.9■■□□□ 1.42
CPSF1-202ENST00000527827 CLPBQ9H078 707 aa23.9■■□□□ 1.42
CPSF1-202ENST00000527827 F8VZ95 297 aa23.89■■□□□ 1.41
CPSF1-202ENST00000527827 MMP20O60882 483 aa23.89■■□□□ 1.41
CPSF1-202ENST00000527827 LRIG2O94898 1065 aa23.89■■□□□ 1.41
CPSF1-202ENST00000527827 YPEL5P62699 121 aa23.89■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms