RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 KIAA0907Q7Z7F0 614 aaPredicted RBP21.27■■□□□ 1
VPS28-208ENST00000527797 RNF135Q8IUD6 432 aa21.27■■□□□ 1
VPS28-208ENST00000527797 MFSD6LQ8IWD5 586 aa21.27■■□□□ 1
VPS28-208ENST00000527797 YAF2Q8IY57 180 aa21.27■■□□□ 1
VPS28-208ENST00000527797 AHI1Q8N157 1196 aa21.27■■□□□ 1
VPS28-208ENST00000527797 SLC25A41Q8N5S1 370 aa21.27■■□□□ 1
VPS28-208ENST00000527797 PGM2Q96G03 612 aa21.27■■□□□ 1
VPS28-208ENST00000527797 ATP6V1G3Q96LB4 118 aa21.27■■□□□ 1
VPS28-208ENST00000527797 NECTIN4Q96NY8 510 aa21.27■■□□□ 1
VPS28-208ENST00000527797 CYTH2Q99418 400 aa21.27■■□□□ 1
VPS28-208ENST00000527797 GAS2L1Q99501 681 aaPredicted RBP21.27■■□□□ 1
VPS28-208ENST00000527797 POMKQ9H5K3 350 aa21.27■■□□□ 1
VPS28-208ENST00000527797 SLC25A13Q9UJS0 675 aa21.27■■□□□ 1
VPS28-208ENST00000527797 K7ERQ8 282 aa21.26■□□□□ 0.99
VPS28-208ENST00000527797 RGS16O15492 202 aaPredicted RBP21.26■□□□□ 0.99
VPS28-208ENST00000527797 EPOP01588 193 aa21.26■□□□□ 0.99
VPS28-208ENST00000527797 DGKGP49619 791 aa21.26■□□□□ 0.99
VPS28-208ENST00000527797 SLC1A5Q15758 541 aa21.26■□□□□ 0.99
VPS28-208ENST00000527797 PCID2Q5JVF3 399 aa21.26■□□□□ 0.99
VPS28-208ENST00000527797 AGBL2Q5U5Z8 902 aa21.26■□□□□ 0.99
VPS28-208ENST00000527797 ELSPBP1Q96BH3 223 aa21.26■□□□□ 0.99
VPS28-208ENST00000527797 TRIM56Q9BRZ2 755 aaKnown RBP21.26■□□□□ 0.99
VPS28-208ENST00000527797 PLAC1Q9HBJ0 212 aa21.26■□□□□ 0.99
VPS28-208ENST00000527797 FETUBQ9UGM5 382 aa21.26■□□□□ 0.99
VPS28-208ENST00000527797 HMGB1P1B2RPK0 211 aaPredicted RBP21.26■□□□□ 0.99
VPS28-208ENST00000527797 POC1B-GALNT4F8VUJ3 575 aa21.26■□□□□ 0.99
VPS28-208ENST00000527797 CTSOP43234 321 aaPredicted RBP21.26■□□□□ 0.99
VPS28-208ENST00000527797 CHRNA4P43681 627 aa21.26■□□□□ 0.99
VPS28-208ENST00000527797 FCHO2Q0JRZ9 810 aa21.26■□□□□ 0.99
VPS28-208ENST00000527797 NR1H3Q13133 447 aa21.26■□□□□ 0.99
VPS28-208ENST00000527797 MBLAC2Q68D91 279 aa21.26■□□□□ 0.99
VPS28-208ENST00000527797 CYS1Q717R9 158 aa21.26■□□□□ 0.99
VPS28-208ENST00000527797 ADIPOR2Q86V24 386 aa21.26■□□□□ 0.99
VPS28-208ENST00000527797 ECT2Q9H8V3 914 aa21.26■□□□□ 0.99
VPS28-208ENST00000527797 SLC24A2Q9UI40 661 aa21.26■□□□□ 0.99
VPS28-208ENST00000527797 SOX13Q9UN79 622 aa21.26■□□□□ 0.99
VPS28-208ENST00000527797 HS3ST2Q9Y278 367 aa21.26■□□□□ 0.99
VPS28-208ENST00000527797 RPS6KL1Q9Y6S9 549 aa21.26■□□□□ 0.99
VPS28-208ENST00000527797 FAM237BA0A1B0GVD1 139 aa21.25■□□□□ 0.99
VPS28-208ENST00000527797 SMAD6O43541 496 aaKnown RBP21.25■□□□□ 0.99
VPS28-208ENST00000527797 CDH16O75309 829 aa21.25■□□□□ 0.99
VPS28-208ENST00000527797 CISD3P0C7P0 127 aa21.25■□□□□ 0.99
VPS28-208ENST00000527797 POLR2EP19388 210 aaKnown RBP21.25■□□□□ 0.99
VPS28-208ENST00000527797 HLA-DPA1P20036 260 aa21.25■□□□□ 0.99
VPS28-208ENST00000527797 PRKCHP24723 683 aa21.25■□□□□ 0.99
VPS28-208ENST00000527797 ECT2LQ008S8 904 aa21.25■□□□□ 0.99
VPS28-208ENST00000527797 SPANXN3Q5MJ09 141 aa21.25■□□□□ 0.99
VPS28-208ENST00000527797 ARMC3Q5W041 872 aa21.25■□□□□ 0.99
VPS28-208ENST00000527797 KCTD16Q68DU8 428 aa21.25■□□□□ 0.99
VPS28-208ENST00000527797 NCEH1Q6PIU2 408 aa21.25■□□□□ 0.99
VPS28-208ENST00000527797 SRLQ86TD4 932 aa21.25■□□□□ 0.99
VPS28-208ENST00000527797 TMEM135Q86UB9 458 aa21.25■□□□□ 0.99
VPS28-208ENST00000527797 SMRP1Q8NCR6 262 aa21.25■□□□□ 0.99
VPS28-208ENST00000527797 PPHLN1Q8NEY8 458 aaKnown RBP21.25■□□□□ 0.99
VPS28-208ENST00000527797 WFIKKN2Q8TEU8 576 aa21.25■□□□□ 0.99
VPS28-208ENST00000527797 TTC17Q96AE7 1141 aa21.25■□□□□ 0.99
VPS28-208ENST00000527797 RPL10LQ96L21 214 aaKnown RBP21.25■□□□□ 0.99
VPS28-208ENST00000527797 KIFC1Q9BW19 673 aa21.25■□□□□ 0.99
VPS28-208ENST00000527797 PLA2G2FQ9BZM2 168 aa21.25■□□□□ 0.99
VPS28-208ENST00000527797 STMN4Q9H169 189 aaPredicted RBP21.25■□□□□ 0.99
VPS28-208ENST00000527797 CD207Q9UJ71 328 aa21.25■□□□□ 0.99
VPS28-208ENST00000527797 ARIH1Q9Y4X5 557 aaPredicted RBP21.25■□□□□ 0.99
VPS28-208ENST00000527797 MYO9BQ13459 2157 aa21.24■□□□□ 0.99
VPS28-208ENST00000527797 USP1O94782 785 aa21.24■□□□□ 0.99
VPS28-208ENST00000527797 SRCP12931 536 aa21.24■□□□□ 0.99
VPS28-208ENST00000527797 PSMC3P17980 439 aa21.24■□□□□ 0.99
VPS28-208ENST00000527797 CSNK1DP48730 415 aa21.24■□□□□ 0.99
VPS28-208ENST00000527797 AP1S1P61966 158 aa21.24■□□□□ 0.99
VPS28-208ENST00000527797 POU6F1Q14863 301 aa21.24■□□□□ 0.99
VPS28-208ENST00000527797 CRYMQ14894 314 aa21.24■□□□□ 0.99
VPS28-208ENST00000527797 SKIDA1Q1XH10 827 aa21.24■□□□□ 0.99
VPS28-208ENST00000527797 KBTBD12Q3ZCT8 623 aa21.24■□□□□ 0.99
VPS28-208ENST00000527797 SIRPB2Q5JXA9 342 aa21.24■□□□□ 0.99
VPS28-208ENST00000527797 ATXN7L2Q5T6C5 722 aaPredicted RBP21.24■□□□□ 0.99
VPS28-208ENST00000527797 PARM1Q6UWI2 310 aa21.24■□□□□ 0.99
VPS28-208ENST00000527797 TDRPQ86YL5 185 aa21.24■□□□□ 0.99
VPS28-208ENST00000527797 RIBC1Q8N443 379 aaPredicted RBP21.24■□□□□ 0.99
VPS28-208ENST00000527797 CPA6Q8N4T0 437 aa21.24■□□□□ 0.99
VPS28-208ENST00000527797 PTCD2Q8WV60 388 aaKnown RBP21.24■□□□□ 0.99
VPS28-208ENST00000527797 FAM161BQ96MY7 647 aa21.24■□□□□ 0.99
VPS28-208ENST00000527797 KXD1Q9BQD3 176 aa21.24■□□□□ 0.99
VPS28-208ENST00000527797 TM6SF2Q9BZW4 377 aa21.24■□□□□ 0.99
VPS28-208ENST00000527797 HPS4Q9NQG7 708 aa21.24■□□□□ 0.99
VPS28-208ENST00000527797 CHRAC1Q9NRG0 131 aa21.24■□□□□ 0.99
VPS28-208ENST00000527797 MOCS1Q9NZB8 636 aa21.24■□□□□ 0.99
VPS28-208ENST00000527797 VPS18Q9P253 973 aa21.24■□□□□ 0.99
VPS28-208ENST00000527797 TRIM24O15164 1050 aa21.23■□□□□ 0.99
VPS28-208ENST00000527797 TULP3O75386 442 aa21.23■□□□□ 0.99
VPS28-208ENST00000527797 ECI2O75521 394 aa21.23■□□□□ 0.99
VPS28-208ENST00000527797 ALDH1A2O94788 518 aa21.23■□□□□ 0.99
VPS28-208ENST00000527797 NDST3O95803 873 aa21.23■□□□□ 0.99
VPS28-208ENST00000527797 FGF1P05230 155 aa21.23■□□□□ 0.99
VPS28-208ENST00000527797 ATXN1LP0C7T5 689 aaKnown RBP21.23■□□□□ 0.99
VPS28-208ENST00000527797 CA4P22748 312 aa21.23■□□□□ 0.99
VPS28-208ENST00000527797 ADRA1DP25100 572 aa21.23■□□□□ 0.99
VPS28-208ENST00000527797 MAPK8P45983 427 aa21.23■□□□□ 0.99
VPS28-208ENST00000527797 STK19P49842 368 aaPredicted RBP21.23■□□□□ 0.99
VPS28-208ENST00000527797 GRM2Q14416 872 aa21.23■□□□□ 0.99
VPS28-208ENST00000527797 EFTUD2Q15029 972 aaKnown RBP eCLIP21.23■□□□□ 0.992e-7■■■■□ 23.3
VPS28-208ENST00000527797 ANKRD20A4Q4UJ75 823 aa21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms