RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 WDPCPO95876 746 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 CALB1P05937 261 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 FGFR1P11362 822 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 SFTPCP11686 197 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 PLS3P13797 630 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 PCSK2P16519 638 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 ZNF26P17031 533 aaPredicted RBP5.88□□□□□ -1.47
CD44-225ENST00000527326 PTPN1P18031 435 aaKnown RBP5.88□□□□□ -1.47
CD44-225ENST00000527326 MYF6P23409 242 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 RRM1P23921 792 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 GCAP28676 217 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 CCND2P30279 289 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 HOXC13P31276 330 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 GRK3P35626 688 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 UGT2B10P36537 528 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 SERPINB5P36952 375 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 TSPAN7P41732 249 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 RAP1GAPP47736 663 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 SERPINH1P50454 418 aaKnown RBP5.88□□□□□ -1.47
CD44-225ENST00000527326 ERFP50548 548 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 CLCNKBP51801 687 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 ARHGDIBP52566 201 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 NDST1P52848 882 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 CACNB3P54284 484 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 RAD23AP54725 363 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 NRLP54845 237 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 HAND2P61296 217 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 ASIC1P78348 528 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 ARHGAP8P85298 464 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 SLC25A3Q00325 362 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 PMS2P3Q13401 168 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 DNASE1L3Q13609 305 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 SEMA3AQ14563 771 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 ZNF174Q15697 407 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 FAM47AQ5JRC9 791 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 TOR2AQ5JU69 321 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 BRMS1LQ5PSV4 323 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 ATAD3CQ5T2N8 411 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 TEDDM1Q5T9Z0 273 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 SDE2Q6IQ49 451 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 LETMD1Q6P1Q0 360 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 DCUN1D2Q6PH85 259 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 ARSKQ6UWY0 536 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 ISLR2Q6UXK2 745 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 KSR2Q6VAB6 950 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 RNF207Q6ZRF8 634 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 LRRC55Q6ZSA7 311 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 USP50Q70EL3 339 aaPredicted RBP5.88□□□□□ -1.47
CD44-225ENST00000527326 SPATC1Q76KD6 591 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 HEATR3Q7Z4Q2 680 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 IRF2BP2Q7Z5L9 587 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 DPP9Q86TI2 863 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 CATSPER3Q86XQ3 398 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 SLC13A5Q86YT5 568 aaPredicted RBP5.88□□□□□ -1.47
CD44-225ENST00000527326 CRLF3Q8IUI8 442 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 TBC1D10CQ8IV04 446 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 MICU2Q8IYU8 434 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 GJD3Q8N144 294 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 CADM2Q8N3J6 435 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 MFSD4AQ8N468 514 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 ZCCHC9Q8N567 271 aaKnown RBP5.88□□□□□ -1.47
CD44-225ENST00000527326 MAGEB6Q8N7X4 407 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 BANPQ8N9N5 519 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 FNDC5Q8NAU1 212 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 ARRDC4Q8NCT1 418 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 PIK3C3Q8NEB9 887 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 ST13P5Q8NFI4 369 aaPredicted RBP5.88□□□□□ -1.47
CD44-225ENST00000527326 MCOLN3Q8TDD5 553 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 IGDCC4Q8TDY8 1250 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 RSAD2Q8WXG1 361 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 KLHL6Q8WZ60 621 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 C11orf24Q96F05 449 aaPredicted RBP5.88□□□□□ -1.47
CD44-225ENST00000527326 MOGAT1Q96PD6 335 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 MNTQ99583 582 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 TMEM121Q9BTD3 319 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 IDI2Q9BXS1 227 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 PPA2Q9H2U2 334 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 DHX33Q9H6R0 707 aaKnown RBP5.88□□□□□ -1.47
CD44-225ENST00000527326 JMJD4Q9H9V9 463 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 POLR1BQ9H9Y6 1135 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 UCK1Q9HA47 277 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 EFCAB1Q9HAE3 211 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 NTN4Q9HB63 628 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 SDHAF3Q9NRP4 125 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 INTS7Q9NVH2 962 aaKnown RBP5.88□□□□□ -1.47
CD44-225ENST00000527326 SMOXQ9NWM0 555 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 ADPRHL2Q9NX46 363 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 GGA3Q9NZ52 723 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 KLHL42Q9P2K6 505 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 GTF2IRD1Q9UHL9 959 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 IPO11Q9UI26 975 aaKnown RBP5.88□□□□□ -1.47
CD44-225ENST00000527326 SERPINB13Q9UIV8 391 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 GRIP1Q9Y3R0 1128 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 NFASCO94856 1347 aa5.88□□□□□ -1.47
CD44-225ENST00000527326 TRPM3Q9HCF6 1732 aaPredicted RBP5.88□□□□□ -1.47
CD44-225ENST00000527326 LOC102724428A0A0B4J2F2 783 aa5.87□□□□□ -1.47
CD44-225ENST00000527326 A0A1B0GTW7 788 aa5.87□□□□□ -1.47
CD44-225ENST00000527326 A0A1W2PRG6 482 aa5.87□□□□□ -1.47
CD44-225ENST00000527326 SH3D21A4FU49 640 aa5.87□□□□□ -1.47
CD44-225ENST00000527326 SAC3D1A6NKF1 404 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms