RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	SLC28A2	O43868	658 aa		4.92	□□□□□ -1.62
CD44-223	ENST00000526553	GLUD1	P00367	558 aa		4.92	□□□□□ -1.62
CD44-223	ENST00000526553	GPD2	P43304	727 aa		4.92	□□□□□ -1.62
CD44-223	ENST00000526553	AMT	P48728	403 aa		4.92	□□□□□ -1.62
CD44-223	ENST00000526553	GLUD2	P49448	558 aa		4.92	□□□□□ -1.62
CD44-223	ENST00000526553	TRAF2	Q12933	501 aa		4.92	□□□□□ -1.62
CD44-223	ENST00000526553	BIRC3	Q13489	604 aa		4.92	□□□□□ -1.62
CD44-223	ENST00000526553	TAF12	Q16514	161 aa		4.92	□□□□□ -1.62
CD44-223	ENST00000526553	DCAF6	Q58WW2	860 aa		4.92	□□□□□ -1.62
CD44-223	ENST00000526553	RUSC1-AS1	Q66K80	236 aa		4.92	□□□□□ -1.62
CD44-223	ENST00000526553	DENND6A	Q8IWF6	608 aa		4.92	□□□□□ -1.62
CD44-223	ENST00000526553	CPXM2	Q8N436	756 aa		4.92	□□□□□ -1.62
CD44-223	ENST00000526553	ADAMTS15	Q8TE58	950 aa		4.92	□□□□□ -1.62
CD44-223	ENST00000526553	NEUROG1	Q92886	237 aa		4.92	□□□□□ -1.62
CD44-223	ENST00000526553	RNF183	Q96D59	192 aa		4.92	□□□□□ -1.62
CD44-223	ENST00000526553	MSTO1	Q9BUK6	570 aa		4.92	□□□□□ -1.62
CD44-223	ENST00000526553	PHF7	Q9BWX1	381 aa	Predicted RBP	4.92	□□□□□ -1.62
CD44-223	ENST00000526553	CD93	Q9NPY3	652 aa		4.92	□□□□□ -1.62
CD44-223	ENST00000526553	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	4.92	□□□□□ -1.62
CD44-223	ENST00000526553	GTF2A1L	Q9UNN4	478 aa		4.92	□□□□□ -1.62
CD44-223	ENST00000526553	IGHV4-28	A0A0C4DH34	117 aa		4.91	□□□□□ -1.62
CD44-223	ENST00000526553	GOLGA6L10	A0A0M3HER8	536 aa		4.91	□□□□□ -1.62
CD44-223	ENST00000526553	GTPBP1	O00178	669 aa	Known RBP	4.91	□□□□□ -1.62
CD44-223	ENST00000526553	CHL1	O00533	1208 aa		4.91	□□□□□ -1.62
CD44-223	ENST00000526553	CEP104	O60308	925 aa		4.91	□□□□□ -1.62
CD44-223	ENST00000526553	ACAA1	P09110	424 aa	Predicted RBP	4.91	□□□□□ -1.62
CD44-223	ENST00000526553	TTK	P33981	857 aa		4.91	□□□□□ -1.62
CD44-223	ENST00000526553	PSMC2	P35998	433 aa	Known RBP	4.91	□□□□□ -1.62
CD44-223	ENST00000526553	ADORA2A-AS1	P86434	159 aa		4.91	□□□□□ -1.62
CD44-223	ENST00000526553	KHDRBS1	Q07666	443 aa	Known RBP eCLIP	4.91	□□□□□ -1.62
CD44-223	ENST00000526553	ST3GAL1	Q11201	340 aa		4.91	□□□□□ -1.62
CD44-223	ENST00000526553	NAA25	Q14CX7	972 aa		4.91	□□□□□ -1.62
CD44-223	ENST00000526553	PLEKHO1	Q53GL0	409 aa	Predicted RBP	4.91	□□□□□ -1.62
CD44-223	ENST00000526553	RETSAT	Q6NUM9	610 aa		4.91	□□□□□ -1.62
CD44-223	ENST00000526553	C17orf99	Q6UX52	265 aa		4.91	□□□□□ -1.62
CD44-223	ENST00000526553	BHLHA9	Q7RTU4	235 aa		4.91	□□□□□ -1.62
CD44-223	ENST00000526553	MIGA1	Q8NAN2	632 aa		4.91	□□□□□ -1.62
CD44-223	ENST00000526553	RASSF8	Q8NHQ8	419 aa		4.91	□□□□□ -1.62
CD44-223	ENST00000526553	UBXN10	Q96LJ8	280 aa		4.91	□□□□□ -1.62
CD44-223	ENST00000526553	SPATS2L	Q9NUQ6	558 aa	Known RBP	4.91	□□□□□ -1.62
CD44-223	ENST00000526553	TMEM160	Q9NX00	188 aa		4.91	□□□□□ -1.62
CD44-223	ENST00000526553	ZNF69	Q9UC07	566 aa		4.91	□□□□□ -1.62
CD44-223	ENST00000526553	CBY3	A6NI87	242 aa		4.9	□□□□□ -1.63
CD44-223	ENST00000526553	C4orf47	A7E2U8	309 aa		4.9	□□□□□ -1.63
CD44-223	ENST00000526553	ITM2A	O43736	263 aa		4.9	□□□□□ -1.63
CD44-223	ENST00000526553	SLC25A17	O43808	307 aa		4.9	□□□□□ -1.63
CD44-223	ENST00000526553	WDHD1	O75717	1129 aa	Predicted RBP	4.9	□□□□□ -1.63
CD44-223	ENST00000526553	PRSS2	P07478	247 aa		4.9	□□□□□ -1.63
CD44-223	ENST00000526553	PLA2G2A	P14555	144 aa		4.9	□□□□□ -1.63
CD44-223	ENST00000526553	MYF6	P23409	242 aa		4.9	□□□□□ -1.63
CD44-223	ENST00000526553	TNFRSF8	P28908	595 aa		4.9	□□□□□ -1.63
CD44-223	ENST00000526553	TLE2	Q04725	743 aa		4.9	□□□□□ -1.63
CD44-223	ENST00000526553	LPIN1	Q14693	890 aa		4.9	□□□□□ -1.63
CD44-223	ENST00000526553	EDRF1	Q3B7T1	1238 aa		4.9	□□□□□ -1.63
CD44-223	ENST00000526553	ALF	Q53S48	1182 aa		4.9	□□□□□ -1.63
CD44-223	ENST00000526553	ADGRG6	Q86SQ4	1221 aa		4.9	□□□□□ -1.63
CD44-223	ENST00000526553	CHD1L	Q86WJ1	897 aa		4.9	□□□□□ -1.63
CD44-223	ENST00000526553	PAF1	Q8N7H5	531 aa		4.9	□□□□□ -1.63
CD44-223	ENST00000526553	TNIP2	Q8NFZ5	429 aa		4.9	□□□□□ -1.63
CD44-223	ENST00000526553	OR14A16	Q8NHC5	309 aa		4.9	□□□□□ -1.63
CD44-223	ENST00000526553	GDPD5	Q8WTR4	605 aa		4.9	□□□□□ -1.63
CD44-223	ENST00000526553	FAM216A	Q8WUB2	273 aa		4.9	□□□□□ -1.63
CD44-223	ENST00000526553	MED30	Q96HR3	178 aa		4.9	□□□□□ -1.63
CD44-223	ENST00000526553	CDT1	Q9H211	546 aa		4.9	□□□□□ -1.63
CD44-223	ENST00000526553	ANKRD10	Q9NXR5	420 aa		4.9	□□□□□ -1.63
CD44-223	ENST00000526553	SLC45A1	Q9Y2W3	748 aa		4.9	□□□□□ -1.63
CD44-223	ENST00000526553	ARHGAP10	A1A4S6	786 aa		4.89	□□□□□ -1.63
CD44-223	ENST00000526553	KDM4E	B2RXH2	506 aa	Predicted RBP	4.89	□□□□□ -1.63
CD44-223	ENST00000526553	GUCY1B2	O75343	617 aa		4.89	□□□□□ -1.63
CD44-223	ENST00000526553	VAMP2	P63027	116 aa		4.89	□□□□□ -1.63
CD44-223	ENST00000526553	YWHAZ	P63104	245 aa	Known RBP	4.89	□□□□□ -1.63
CD44-223	ENST00000526553	KEAP1	Q14145	624 aa		4.89	□□□□□ -1.63
CD44-223	ENST00000526553	MYBPC2	Q14324	1141 aa		4.89	□□□□□ -1.63
CD44-223	ENST00000526553	ZNF585B	Q52M93	769 aa		4.89	□□□□□ -1.63
CD44-223	ENST00000526553	EFHC1	Q5JVL4	640 aa		4.89	□□□□□ -1.63
CD44-223	ENST00000526553	NAA35	Q5VZE5	725 aa		4.89	□□□□□ -1.63
CD44-223	ENST00000526553	CCDC70	Q6NSX1	233 aa		4.89	□□□□□ -1.63
CD44-223	ENST00000526553	LRRC8D	Q7L1W4	858 aa		4.89	□□□□□ -1.63
CD44-223	ENST00000526553	MON1A	Q86VX9	555 aa		4.89	□□□□□ -1.63
CD44-223	ENST00000526553	CLIP4	Q8N3C7	705 aa		4.89	□□□□□ -1.63
CD44-223	ENST00000526553	GPT2	Q8TD30	523 aa		4.89	□□□□□ -1.63
CD44-223	ENST00000526553	YME1L1	Q96TA2	773 aa		4.89	□□□□□ -1.63
CD44-223	ENST00000526553	EYA3	Q99504	573 aa		4.89	□□□□□ -1.63
CD44-223	ENST00000526553	SLC32A1	Q9H598	525 aa		4.89	□□□□□ -1.63
CD44-223	ENST00000526553	CLK4	Q9HAZ1	481 aa	Known RBP	4.89	□□□□□ -1.63
CD44-223	ENST00000526553	PGAP2	Q9UHJ9	254 aa		4.89	□□□□□ -1.63
CD44-223	ENST00000526553	AGO1	Q9UL18	857 aa	Known RBP	4.89	□□□□□ -1.63
CD44-223	ENST00000526553	HSF4	Q9ULV5	492 aa		4.89	□□□□□ -1.63
CD44-223	ENST00000526553	PCDHGB5	Q9Y5G0	923 aa		4.89	□□□□□ -1.63
CD44-223	ENST00000526553	ADGRF5	Q8IZF2	1346 aa		4.89	□□□□□ -1.63
CD44-223	ENST00000526553	PABPN1L	A6NDY0	278 aa	Known RBP	4.88	□□□□□ -1.63
CD44-223	ENST00000526553	ZNF8	P17098	575 aa	Predicted RBP	4.88	□□□□□ -1.63
CD44-223	ENST00000526553	PTPN2	P17706	415 aa		4.88	□□□□□ -1.63
CD44-223	ENST00000526553	CD53	P19397	219 aa		4.88	□□□□□ -1.63
CD44-223	ENST00000526553	RYK	P34925	604 aa		4.88	□□□□□ -1.63
CD44-223	ENST00000526553	PGM1	P36871	562 aa		4.88	□□□□□ -1.63
CD44-223	ENST00000526553	LIFR	P42702	1097 aa		4.88	□□□□□ -1.63
CD44-223	ENST00000526553	CAPS	Q13938	189 aa		4.88	□□□□□ -1.63
CD44-223	ENST00000526553	CTTN	Q14247	550 aa	Known RBP	4.88	□□□□□ -1.63
CD44-223	ENST00000526553	ASIC2	Q16515	512 aa		4.88	□□□□□ -1.63

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