RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 KDM4BO94953 1096 aa2.91□□□□□ -1.94
NUP54-208ENST00000508604 HNRNPCL4P0DMR1 293 aa2.91□□□□□ -1.94
NUP54-208ENST00000508604 GYS1P13807 737 aa2.91□□□□□ -1.94
NUP54-208ENST00000508604 CDK7P50613 346 aa2.91□□□□□ -1.94
NUP54-208ENST00000508604 SAFBQ15424 915 aaKnown RBP eCLIP2.91□□□□□ -1.94
NUP54-208ENST00000508604 TMEM30BQ3MIR4 351 aa2.91□□□□□ -1.94
NUP54-208ENST00000508604 MB21D2Q8IYB1 491 aaPredicted RBP2.91□□□□□ -1.94
NUP54-208ENST00000508604 CCDC105Q8IYK2 499 aa2.91□□□□□ -1.94
NUP54-208ENST00000508604 CNBD1Q8NA66 436 aa2.91□□□□□ -1.94
NUP54-208ENST00000508604 SLC2A12Q8TD20 617 aa2.91□□□□□ -1.94
NUP54-208ENST00000508604 TAS1R2Q8TE23 839 aa2.91□□□□□ -1.94
NUP54-208ENST00000508604 OTUD7AQ8TE49 926 aaPredicted RBP2.91□□□□□ -1.94
NUP54-208ENST00000508604 CPT1BQ92523 772 aa2.91□□□□□ -1.94
NUP54-208ENST00000508604 TSR2Q969E8 191 aaKnown RBP2.91□□□□□ -1.94
NUP54-208ENST00000508604 C3orf30Q96M34 536 aa2.91□□□□□ -1.94
NUP54-208ENST00000508604 STK33Q9BYT3 514 aa2.91□□□□□ -1.94
NUP54-208ENST00000508604 MVB12BQ9H7P6 319 aa2.91□□□□□ -1.94
NUP54-208ENST00000508604 CERS4Q9HA82 394 aa2.91□□□□□ -1.94
NUP54-208ENST00000508604 FBRSL1Q9HCM7 1045 aaKnown RBP2.91□□□□□ -1.94
NUP54-208ENST00000508604 SLC22A11Q9NSA0 550 aa2.91□□□□□ -1.94
NUP54-208ENST00000508604 KLQ9UEF7 1012 aa2.91□□□□□ -1.94
NUP54-208ENST00000508604 POU2F3Q9UKI9 436 aa2.91□□□□□ -1.94
NUP54-208ENST00000508604 FAM90A18PA6NE21 464 aa2.9□□□□□ -1.95
NUP54-208ENST00000508604 FAM90A16PA6NEW6 464 aa2.9□□□□□ -1.95
NUP54-208ENST00000508604 FAM90A9PA6NNJ1 464 aa2.9□□□□□ -1.95
NUP54-208ENST00000508604 FAM90A5PA8MXJ8 464 aa2.9□□□□□ -1.95
NUP54-208ENST00000508604 FAM157AC9JC47 383 aa2.9□□□□□ -1.95
NUP54-208ENST00000508604 ASNA1O43681 348 aa2.9□□□□□ -1.95
NUP54-208ENST00000508604 EXTL3O43909 919 aa2.9□□□□□ -1.95
NUP54-208ENST00000508604 PLA2G6O60733 806 aa2.9□□□□□ -1.95
NUP54-208ENST00000508604 HEXIM1O94992 359 aaKnown RBP2.9□□□□□ -1.95
NUP54-208ENST00000508604 CLDN14O95500 239 aa2.9□□□□□ -1.95
NUP54-208ENST00000508604 FAM90A15PP0C7V4 464 aa2.9□□□□□ -1.95
NUP54-208ENST00000508604 FAM90A14PP0C7W9 464 aa2.9□□□□□ -1.95
NUP54-208ENST00000508604 LPIN1Q14693 890 aa2.9□□□□□ -1.95
NUP54-208ENST00000508604 KRT72Q14CN4 511 aa2.9□□□□□ -1.95
NUP54-208ENST00000508604 SETMARQ53H47 684 aaPredicted RBP2.9□□□□□ -1.95
NUP54-208ENST00000508604 FAM69BQ5VUD6 431 aa2.9□□□□□ -1.95
NUP54-208ENST00000508604 IRAK1BP1Q5VVH5 260 aa2.9□□□□□ -1.95
NUP54-208ENST00000508604 NFRKBQ6P4R8 1299 aa2.9□□□□□ -1.95
NUP54-208ENST00000508604 BRSK2Q8IWQ3 736 aa2.9□□□□□ -1.95
NUP54-208ENST00000508604 KBTBD3Q8NAB2 608 aa2.9□□□□□ -1.95
NUP54-208ENST00000508604 ZNF248Q8NDW4 579 aa2.9□□□□□ -1.95
NUP54-208ENST00000508604 LNX1Q8TBB1 728 aaPredicted RBP2.9□□□□□ -1.95
NUP54-208ENST00000508604 RIPOR3Q96MK2 946 aa2.9□□□□□ -1.95
NUP54-208ENST00000508604 TMLHEQ9NVH6 421 aa2.9□□□□□ -1.95
NUP54-208ENST00000508604 LZTS1Q9Y250 596 aa2.9□□□□□ -1.95
NUP54-208ENST00000508604 A0A1W2PS18 150 aa2.89□□□□□ -1.95
NUP54-208ENST00000508604 TARSL2A2RTX5 802 aaKnown RBP2.89□□□□□ -1.95
NUP54-208ENST00000508604 OR6C68A6NDL8 312 aa2.89□□□□□ -1.95
NUP54-208ENST00000508604 HOXC13P31276 330 aa2.89□□□□□ -1.95
NUP54-208ENST00000508604 KRT2P35908 639 aa2.89□□□□□ -1.95
NUP54-208ENST00000508604 SREBF2Q12772 1141 aa2.89□□□□□ -1.95
NUP54-208ENST00000508604 CAPSQ13938 189 aa2.89□□□□□ -1.95
NUP54-208ENST00000508604 TBC1D9BQ66K14 1250 aa2.89□□□□□ -1.95
NUP54-208ENST00000508604 CCDC129Q6ZRS4 1044 aa2.89□□□□□ -1.95
NUP54-208ENST00000508604 RAB11FIP2Q7L804 512 aa2.89□□□□□ -1.95
NUP54-208ENST00000508604 SH2D6Q7Z4S9 175 aa2.89□□□□□ -1.95
NUP54-208ENST00000508604 C11orf96Q7Z7L8 435 aa2.89□□□□□ -1.95
NUP54-208ENST00000508604 RASSF8Q8NHQ8 419 aa2.89□□□□□ -1.95
NUP54-208ENST00000508604 TANKQ92844 425 aa2.89□□□□□ -1.95
NUP54-208ENST00000508604 RNF183Q96D59 192 aa2.89□□□□□ -1.95
NUP54-208ENST00000508604 CLPBQ9H078 707 aa2.89□□□□□ -1.95
NUP54-208ENST00000508604 PTPRHQ9HD43 1115 aa2.89□□□□□ -1.95
NUP54-208ENST00000508604 WDR6Q9NNW5 1121 aaKnown RBP2.89□□□□□ -1.95
NUP54-208ENST00000508604 ABCF3Q9NUQ8 709 aa2.89□□□□□ -1.95
NUP54-208ENST00000508604 SLCO3A1Q9UIG8 710 aa2.89□□□□□ -1.95
NUP54-208ENST00000508604 DHX16O60231 1041 aaKnown RBP2.88□□□□□ -1.95
NUP54-208ENST00000508604 LINC00271P0C7V0 271 aa2.88□□□□□ -1.95
NUP54-208ENST00000508604 TIMP3P35625 211 aa2.88□□□□□ -1.95
NUP54-208ENST00000508604 FMO5P49326 533 aa2.88□□□□□ -1.95
NUP54-208ENST00000508604 NR0B1P51843 470 aaKnown RBP2.88□□□□□ -1.95
NUP54-208ENST00000508604 RUNDC3AQ59EK9 446 aa2.88□□□□□ -1.95
NUP54-208ENST00000508604 ARHGAP11AQ6P4F7 1023 aa2.88□□□□□ -1.95
NUP54-208ENST00000508604 SHFQ7M4L6 423 aa2.88□□□□□ -1.95
NUP54-208ENST00000508604 DENND6AQ8IWF6 608 aa2.88□□□□□ -1.95
NUP54-208ENST00000508604 CCAR1Q8IX12 1150 aaKnown RBP2.88□□□□□ -1.95
NUP54-208ENST00000508604 OR2C3Q8N628 320 aa2.88□□□□□ -1.95
NUP54-208ENST00000508604 MCPH1Q8NEM0 835 aa2.88□□□□□ -1.95
NUP54-208ENST00000508604 FAM76AQ8TAV0 307 aa2.88□□□□□ -1.95
NUP54-208ENST00000508604 TMEM19Q96HH6 336 aa2.88□□□□□ -1.95
NUP54-208ENST00000508604 ELAC1Q9H777 363 aaKnown RBP2.88□□□□□ -1.95
NUP54-208ENST00000508604 SEPSECSQ9HD40 501 aaKnown RBP2.88□□□□□ -1.95
NUP54-208ENST00000508604 PCDHGB2Q9Y5G2 931 aa2.88□□□□□ -1.95
NUP54-208ENST00000508604 CGNL1Q0VF96 1302 aa2.88□□□□□ -1.95
NUP54-208ENST00000508604 ATXN2Q99700 1313 aaKnown RBP2.88□□□□□ -1.95
NUP54-208ENST00000508604 LILRA5A6NI73 299 aa2.88□□□□□ -1.95
NUP54-208ENST00000508604 PMM2O15305 246 aa2.88□□□□□ -1.95
NUP54-208ENST00000508604 RASA4O43374 803 aa2.88□□□□□ -1.95
NUP54-208ENST00000508604 TFPIP10646 304 aa2.88□□□□□ -1.95
NUP54-208ENST00000508604 LYL1P12980 280 aa2.88□□□□□ -1.95
NUP54-208ENST00000508604 ZNF10P21506 573 aaPredicted RBP2.88□□□□□ -1.95
NUP54-208ENST00000508604 MARK3P27448 753 aa2.88□□□□□ -1.95
NUP54-208ENST00000508604 ALDH4A1P30038 563 aa2.88□□□□□ -1.95
NUP54-208ENST00000508604 FUT6P51993 359 aa2.88□□□□□ -1.95
NUP54-208ENST00000508604 HDAC4P56524 1084 aa2.88□□□□□ -1.95
NUP54-208ENST00000508604 ZNF155Q12901 538 aaPredicted RBP2.88□□□□□ -1.95
NUP54-208ENST00000508604 ZC3HC1Q86WB0 502 aaKnown RBP2.88□□□□□ -1.95
NUP54-208ENST00000508604 PTGR2Q8N8N7 351 aaPredicted RBP2.88□□□□□ -1.95
NUP54-208ENST00000508604 ZMIZ2Q8NF64 920 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms