RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 RUNX2Q13950 521 aa4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 EIF4A2Q14240 407 aaKnown RBP4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 PPP2R5BQ15173 497 aa4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 EZH2Q15910 746 aaKnown RBP4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 MTX3Q5HYI7 312 aa4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 SNX30Q5VWJ9 437 aa4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 ZNF626Q68DY1 528 aa4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 TXNDC8Q6A555 127 aa4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 KLHL24Q6TFL4 600 aa4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 PXKQ7Z7A4 578 aa4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 TBC1D26Q86UD7 250 aa4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 GPSM1Q86YR5 675 aa4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 LURAP1LQ8IV03 231 aa4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 KIAA2013Q8IYS2 634 aa4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 KDM1BQ8NB78 822 aa4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 NTN5Q8WTR8 489 aaPredicted RBP4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 TMEM174Q8WUU8 243 aa4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 COQ8BQ96D53 544 aa4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 RNF183Q96D59 192 aa4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 TRMOQ9BU70 441 aa4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 EIF2B3Q9NR50 452 aaKnown RBP4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 SPATS2LQ9NUQ6 558 aaKnown RBP4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 CTNNAL1Q9UBT7 734 aa4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 COG5Q9UP83 839 aa4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 FNDC1Q4ZHG4 1894 aaPredicted RBP4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 CBY3A6NI87 242 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 PRSS47A8MTI9 375 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 STMND1H3BQB6 276 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 ATG13O75143 517 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 ZC3H11AO75152 810 aaKnown RBP eCLIP4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 SEC31AO94979 1220 aaKnown RBP4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 MMP3P08254 477 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 ACADMP11310 421 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 PCNAP12004 261 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 LAMP2P13473 410 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 CTPS1P17812 591 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 NFKBIAP25963 317 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 TTKP33981 857 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 RYKP34925 604 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 MMP13P45452 471 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 GNAQP50148 359 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 EFNA5P52803 228 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 TMPRSS3P57727 454 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 NANOS3P60323 173 aaKnown RBP4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 OLR1P78380 273 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 TMEM115Q12893 351 aaPredicted RBP4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 PDE1CQ14123 709 aaPredicted RBP4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 RNPS1Q15287 305 aaKnown RBP4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 INPP5JQ15735 1006 aaPredicted RBP4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 ASPHD1Q5U4P2 390 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 MORN5Q5VZ52 161 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 HEPHL1Q6MZM0 1159 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 CFAP161Q6P656 301 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 SHC4Q6S5L8 630 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 SRRM1Q8IYB3 904 aaKnown RBP4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 MCPH1Q8NEM0 835 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 C16orf52Q8NHV5 167 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 CEP76Q8TAP6 659 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 PIGOQ8TEQ8 1089 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 SMARCE1Q969G3 411 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 INTS12Q96CB8 462 aaKnown RBP4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 ZFYVE19Q96K21 471 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 YME1L1Q96TA2 773 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 NUF2Q9BZD4 464 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 GLIS2Q9BZE0 524 aaPredicted RBP4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 TMX4Q9H1E5 349 aaPredicted RBP4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 DECR2Q9NUI1 292 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 NCKIPSDQ9NZQ3 722 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 LIMA1Q9UHB6 759 aaKnown RBP4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 PCDHA12Q9UN75 941 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 CARD8Q9Y2G2 431 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 FRMD4BQ9Y2L6 1034 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 FAM96BQ9Y3D0 163 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 KCNE2Q9Y6J6 123 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 SCINQ9Y6U3 715 aa4.27□□□□□ -1.73
HMGB1P28-201ENST00000507778 ZNF804BA4D1E1 1349 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 GAGE12JA6NER3 117 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 EIF3CLB5ME19 914 aaKnown RBP4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 KLRF2D3W0D1 207 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 MDM4O15151 490 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 DOK2O60496 412 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 PTP4A3O75365 173 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 IFNA2P01563 188 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 TFP02787 698 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 KLKB1P03952 638 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 EDN2P20800 178 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 CLCN5P51795 746 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 DRG2P55039 364 aaKnown RBP4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 CLDN2P57739 230 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 SSBP2P81877 361 aaPredicted RBP4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 PRKG2Q13237 762 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 DPCR1Q3MIW9 517 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 PLEKHO1Q53GL0 409 aaPredicted RBP4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 MANEAQ5SRI9 462 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 SPATA1Q5VX52 437 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 CES5AQ6NT32 575 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 TMEM71Q6P5X7 295 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 GSTA5Q7RTV2 222 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 CCDC105Q8IYK2 499 aa4.26□□□□□ -1.73
HMGB1P28-201ENST00000507778 NANOGP1Q8N7R0 232 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms