RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	TTPAL	Q9BTX7	342 aa		4.56	□□□□□ -1.68
VPS52-222	ENST00000495981	TRIM6	Q9C030	488 aa	Predicted RBP	4.56	□□□□□ -1.68
VPS52-222	ENST00000495981	SEMA4C	Q9C0C4	833 aa		4.56	□□□□□ -1.68
VPS52-222	ENST00000495981	CDT1	Q9H211	546 aa		4.56	□□□□□ -1.68
VPS52-222	ENST00000495981	GOLGA2P5	Q9HBQ8	144 aa		4.56	□□□□□ -1.68
VPS52-222	ENST00000495981	LANCL2	Q9NS86	450 aa		4.56	□□□□□ -1.68
VPS52-222	ENST00000495981	ANKEF1	Q9NU02	776 aa		4.56	□□□□□ -1.68
VPS52-222	ENST00000495981	IFT80	Q9P2H3	777 aa	Predicted RBP	4.56	□□□□□ -1.68
VPS52-222	ENST00000495981		Q9UFV3	132 aa		4.56	□□□□□ -1.68
VPS52-222	ENST00000495981	CEP83	Q9Y592	693 aa		4.56	□□□□□ -1.68
VPS52-222	ENST00000495981	CYP46A1	Q9Y6A2	500 aa		4.56	□□□□□ -1.68
VPS52-222	ENST00000495981	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	4.56	□□□□□ -1.68	9e-11	■□□□□ 10.8
VPS52-222	ENST00000495981	ZFP37	Q9Y6Q3	630 aa	Predicted RBP	4.56	□□□□□ -1.68
VPS52-222	ENST00000495981	DENND4C	Q5VZ89	1909 aa		4.56	□□□□□ -1.68
VPS52-222	ENST00000495981	MYH11	P35749	1972 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981		A0A087WWV3	80 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	ARHGEF37	A1IGU5	675 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	WDR27	A2RRH5	827 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981		I3L4J1	428 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	HNRNPDL	O14979	420 aa	Known RBP	4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	AREL1	O15033	823 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	TIMM44	O43615	452 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	FOXD2	O60548	495 aa	Predicted RBP	4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	MOSPD3	O75425	235 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	ECI2	O75521	394 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	ITGA10	O75578	1167 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	PAPSS2	O95340	614 aa	Predicted RBP	4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	TNFRSF6B	O95407	300 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	VNN2	O95498	520 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	PRKCB	P05771	671 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	RHO	P08100	348 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	ITGA5	P08648	1049 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	PROZ	P22891	400 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	ITPKB	P27987	946 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	SLC6A4	P31645	630 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	CNR2	P34972	360 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	CRHR1	P34998	444 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	NAMPT	P43490	491 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	AFM	P43652	599 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	PIK3CG	P48736	1102 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	PNLIPRP1	P54315	467 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	IRX4	P78413	519 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	MAPK7	Q13164	816 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	SLC13A2	Q13183	592 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	CTBP1	Q13363	440 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	EIF4H	Q15056	248 aa	Known RBP	4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	CALCRL	Q16602	461 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	ME3	Q16798	604 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	UPP1	Q16831	310 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	WDR72	Q3MJ13	1102 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	PLK5	Q496M5	336 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	PABPC1L	Q4VXU2	614 aa	Known RBP	4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	XKR4	Q5GH76	650 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	PPM1L	Q5SGD2	360 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	RRAGB	Q5VZM2	374 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	CCNI2	Q6ZMN8	369 aa	Predicted RBP	4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	RSRC2	Q7L4I2	434 aa	Known RBP	4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	OTUD6A	Q7L8S5	288 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	PIP4P1	Q86T03	277 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	STK32C	Q86UX6	486 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	MOGAT3	Q86VF5	341 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	ZC3H18	Q86VM9	953 aa	Known RBP	4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	CATSPER3	Q86XQ3	398 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	DTX1	Q86Y01	620 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	PLXDC1	Q8IUK5	500 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	CPO	Q8IVL8	374 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	DIS3L2	Q8IYB7	885 aa	Known RBP	4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	HACE1	Q8IYU2	909 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	SPEM1	Q8N4L4	309 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	PNPLA1	Q8N8W4	532 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	MCPH1	Q8NEM0	835 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	OR6B3	Q8NGW1	331 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	SLC30A5	Q8TAD4	765 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	DNASE1L2	Q92874	299 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	TRIM63	Q969Q1	353 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	LOXL4	Q96JB6	756 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	ZSWIM3	Q96MP5	696 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	GORASP1	Q9BQQ3	440 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	CHST8	Q9H2A9	424 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	CLMP	Q9H6B4	373 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	TTC12	Q9H892	705 aa	Predicted RBP	4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	TUFT1	Q9NNX1	390 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	FSCN3	Q9NQT6	498 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	TM7SF3	Q9NS93	570 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	PDRG1	Q9NUG6	133 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	PRMT7	Q9NVM4	692 aa	Predicted RBP	4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	SIDT1	Q9NXL6	827 aa	Known RBP	4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	ING3	Q9NXR8	418 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	DNMT3B	Q9UBC3	853 aa	Known RBP	4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	ORC3	Q9UBD5	711 aa	Predicted RBP	4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	SLC23A1	Q9UHI7	598 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	CDC42EP3	Q9UKI2	254 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	CDY1	Q9Y6F8	540 aa		4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	TNRC6B	Q9UPQ9	1833 aa	Known RBP	4.55	□□□□□ -1.68
VPS52-222	ENST00000495981	USP9Y	O00507	2555 aa	Predicted RBP	4.55	□□□□□ -1.68
VPS52-222	ENST00000495981		A0A0B4J269	797 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	DYTN	A2CJ06	578 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	C2orf78	A6NCI8	922 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	BTBD18	B2RXH4	712 aa		4.54	□□□□□ -1.68
VPS52-222	ENST00000495981	PODXL	O00592	558 aa		4.54	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms