RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 UBAP2Q5T6F2 1119 aaKnown RBP16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 CIDEBQ9UHD4 219 aa16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 DERAQ9Y315 318 aa16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 RBMX2Q9Y388 322 aaKnown RBP16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 TTLL13PA6NNM8 815 aa16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 GABRB2P47870 512 aa16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 CLCNKBP51801 687 aa16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 BTG3Q14201 252 aaPredicted RBP16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 SYTL3Q4VX76 610 aa16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 RSBN1Q5VWQ0 802 aaPredicted RBP16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 NEPROQ6NW34 567 aa16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 MAGEE2Q8TD90 523 aaPredicted RBP16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 CRYGNQ8WXF5 182 aa16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 CIB1Q99828 191 aa16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 CDHR5Q9HBB8 845 aa16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 PARVBQ9HBI1 364 aa16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 ZNF112Q9UJU3 913 aa16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 EFR3BQ9Y2G0 817 aa16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 PTPRJQ12913 1337 aa16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 A0A1B0GVG6 124 aa16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 HDAC3O15379 428 aa16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 MSI1O43347 362 aaKnown RBP16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 LDLRP01130 860 aa16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 PIGRP01833 764 aa16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 NDUFV1P49821 464 aa16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 PTP4A2Q12974 167 aa16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 DMC1Q14565 340 aa16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 C16orf59Q7L2K0 433 aa16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 STK32CQ86UX6 486 aa16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 SREK1IP1Q8N9Q2 155 aaPredicted RBP16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 GIT1Q9Y2X7 761 aa16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 TAF1P21675 1872 aa16.46■□□□□ 0.23
CCDC88B-209ENST00000494080 BAIAP3O94812 1187 aa16.46■□□□□ 0.22
CCDC88B-209ENST00000494080 RBP1P09455 135 aa16.46■□□□□ 0.22
CCDC88B-209ENST00000494080 FCGR1AP12314 374 aa16.46■□□□□ 0.22
CCDC88B-209ENST00000494080 GNAZP19086 355 aa16.46■□□□□ 0.22
CCDC88B-209ENST00000494080 RPL9P32969 192 aaKnown RBP16.46■□□□□ 0.22
CCDC88B-209ENST00000494080 CCL14Q16627 93 aa16.46■□□□□ 0.22
CCDC88B-209ENST00000494080 ZC3H3Q8IXZ2 948 aaKnown RBP16.46■□□□□ 0.22
CCDC88B-209ENST00000494080 CAPSLQ8WWF8 208 aa16.46■□□□□ 0.22
CCDC88B-209ENST00000494080 FAM162AQ96A26 154 aa16.46■□□□□ 0.22
CCDC88B-209ENST00000494080 PANX3Q96QZ0 392 aa16.46■□□□□ 0.22
CCDC88B-209ENST00000494080 RAB26Q9ULW5 256 aa16.46■□□□□ 0.22
CCDC88B-209ENST00000494080 KANSL1LA0AUZ9 987 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 OR6B1O95007 311 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 ITGB6P18564 788 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 JAK1P23458 1154 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 GDF10P55107 478 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 STRADAQ7RTN6 431 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 P3H2Q8IVL5 708 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 RP9Q8TA86 221 aaKnown RBP16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 LMO3Q8TAP4 145 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 CLEC4CQ8WTT0 213 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 IL22Q9GZX6 179 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 COG4Q9H9E3 785 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 RGS18Q9NS28 235 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 C2CD4BA6NLJ0 364 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 WDR47O94967 919 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 ASGR1P07306 291 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 PIRTP0C851 137 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 IMPDH2P12268 514 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 EPHB3P54753 998 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 INAQ16352 499 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 CCDC126Q96EE4 140 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 FCRL2Q96LA5 508 aaPredicted RBP16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 FIZ1Q96SL8 496 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 THUMPD3Q9BV44 507 aaKnown RBP16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 PCDHB8Q9UN66 801 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 VPS9D1Q9Y2B5 631 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 PTCH2Q9Y6C5 1203 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 TRIM38O00635 465 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 ASLP04424 464 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 MPOP05164 745 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 CDH2P19022 906 aaPredicted RBP16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 PSMB9P28065 219 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 LRPAP1P30533 357 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 GPD2P43304 727 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 TUSC3Q13454 348 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 GTF2H3Q13889 308 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 EGFLAMQ63HQ2 1017 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 KLHDC10Q6PID8 442 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 SLC26A9Q7LBE3 791 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 BNIPLQ7Z465 357 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 SLCO2A1Q92959 643 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 C17orf80Q9BSJ5 609 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 SENP6Q9GZR1 1112 aaPredicted RBP16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 PTPRHQ9HD43 1115 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 WWOXQ9NZC7 414 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 MYH14Q7Z406 1995 aaKnown RBP16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 MYBPHLA2RUH7 354 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 ASNA1O43681 348 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 CD86P42081 329 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 CCDC185Q8N715 623 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 ERLEC1Q96DZ1 483 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 COX4I2Q96KJ9 171 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 LENG8Q96PV6 779 aaPredicted RBP16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 MAF1Q9H063 256 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 ZNF395Q9H8N7 513 aaPredicted RBP16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 NMRK2Q9NPI5 230 aa16.45■□□□□ 0.22
CCDC88B-209ENST00000494080 SYBUQ9NX95 663 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms