RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 BABAM1Q9NWV8 329 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 NKIRAS2Q9NYR9 191 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 HDAC6Q9UBN7 1215 aa4.31□□□□□ -1.72
PTCD3-216ENST00000487043 COL14A1Q05707 1796 aaKnown RBP4.31□□□□□ -1.72
PTCD3-216ENST00000487043 CRB1P82279 1406 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 MAP3K5Q99683 1374 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 MAST3O60307 1309 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 FANCIQ9NVI1 1328 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 hCG_1807616A0A1W2PRN6 198 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 PTGES3LE9PB15 166 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 TGFB1I1O43294 461 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 ORC4O43929 436 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 CCNDBP1O95273 360 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 STARD3NLO95772 234 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 MT-CO3P00414 261 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 HKR1P10072 659 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 CYP2D6P10635 497 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 AKR1B1P15121 316 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 HOXB9P17482 250 aaPredicted RBP4.3□□□□□ -1.72
PTCD3-216ENST00000487043 ICAM3P32942 547 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 MTNR1AP48039 350 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 CYP4F2P78329 520 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 BLOC1S1P78537 153 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 MC1RQ01726 317 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 TUBA3CQ13748 450 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 KCNB1Q14721 858 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 WTAPQ15007 396 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 MED22Q15528 200 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 TAF7Q15545 349 aaPredicted RBP4.3□□□□□ -1.72
PTCD3-216ENST00000487043 SLC18A3Q16572 532 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 FBXO43Q4G163 708 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 ARL13AQ5H913 290 aaPredicted RBP4.3□□□□□ -1.72
PTCD3-216ENST00000487043 ZNF667Q5HYK9 610 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 C1orf141Q5JVX7 400 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 ZNF530Q6P9A1 599 aaPredicted RBP4.3□□□□□ -1.72
PTCD3-216ENST00000487043 GJB7Q6PEY0 223 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 TUBA3EQ6PEY2 450 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 TMEM65Q6PI78 240 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 SLC30A9Q6PML9 568 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 DCDC5Q6ZRR9 648 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 RRM2BQ7LG56 351 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 BCDIN3DQ7Z5W3 292 aaKnown RBP4.3□□□□□ -1.72
PTCD3-216ENST00000487043 LINC01465Q8N7H1 131 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 LSMEM1Q8N8F7 131 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 CAVIN3Q969G5 261 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 KLHL29Q96CT2 875 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 ZNF845Q96IR2 970 aaPredicted RBP4.3□□□□□ -1.72
PTCD3-216ENST00000487043 KLHL15Q96M94 604 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 PIP5K1AQ99755 562 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 ARL15Q9NXU5 204 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 ASIC5Q9NY37 505 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 IL1RAPL1Q9NZN1 696 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 SEMA5BQ9P283 1151 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 PEMTQ9UBM1 199 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 ZNF215Q9UL58 517 aaPredicted RBP4.3□□□□□ -1.72
PTCD3-216ENST00000487043 CORO1CQ9ULV4 474 aaPredicted RBP4.3□□□□□ -1.72
PTCD3-216ENST00000487043 PKP3Q9Y446 797 aa4.3□□□□□ -1.72
PTCD3-216ENST00000487043 CEMIPQ8WUJ3 1361 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 SPATA31A1Q5TZJ5 1347 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 SALL3Q9BXA9 1300 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 CCDC151A5D8V7 595 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 SYNDIG1LA6NDD5 238 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 C16orf96A6NNT2 1141 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 C17orf100A8MU93 164 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 MCIDASD6RGH6 385 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 RNMTO43148 476 aaKnown RBP4.29□□□□□ -1.72
PTCD3-216ENST00000487043 CEP104O60308 925 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 HBP1O60381 514 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 GCATO75600 419 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 SGPL1O95470 568 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 CHRM4P08173 479 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 HSP90AB1P08238 724 aaKnown RBP4.29□□□□□ -1.72
PTCD3-216ENST00000487043 RFPL3SP0C7P2 107 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 PORP16435 677 aaPredicted RBP4.29□□□□□ -1.72
PTCD3-216ENST00000487043 BSGP35613 385 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 ARL1P40616 181 aaPredicted RBP4.29□□□□□ -1.72
PTCD3-216ENST00000487043 HADHAP40939 763 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 PTPN9P43378 593 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 ZNF84P51523 738 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 OAZ1P54368 228 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 ADPRHP54922 357 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 CREB5Q02930 508 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 DMWDQ09019 674 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 TMEM115Q12893 351 aaPredicted RBP4.29□□□□□ -1.72
PTCD3-216ENST00000487043 DHRS13Q6UX07 377 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 SERPINA13PQ6UXR4 307 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 SLC29A4Q7RTT9 530 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 MDGA2Q7Z553 956 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 RASAL3Q86YV0 1011 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 GHDCQ8N2G8 530 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 FAM110DQ8TAY7 271 aaPredicted RBP4.29□□□□□ -1.72
PTCD3-216ENST00000487043 NEU4Q8WWR8 484 aaPredicted RBP4.29□□□□□ -1.72
PTCD3-216ENST00000487043 HSPH1Q92598 858 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 TBC1D5Q92609 795 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 CELF1Q92879 486 aaKnown RBP4.29□□□□□ -1.72
PTCD3-216ENST00000487043 ATP2A3Q93084 1043 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 NSUN4Q96CB9 384 aaKnown RBP4.29□□□□□ -1.72
PTCD3-216ENST00000487043 PERPQ96FX8 193 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 CCDC17Q96LX7 622 aa4.29□□□□□ -1.72
PTCD3-216ENST00000487043 ADAD1Q96M93 576 aaKnown RBP4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms