RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 LIMS2Q7Z4I7 341 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 LINC00523Q86TU6 105 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 DENND6AQ8IWF6 608 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 MYO1HQ8N1T3 1032 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 TXNDC5Q8NBS9 432 aaKnown RBP12.34□□□□□ -0.43
COL3A1-206ENST00000487010 B3GALNT2Q8NCR0 500 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 GRIN3AQ8TCU5 1115 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 FTHL17Q9BXU8 183 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 TRPC7Q9HCX4 862 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 MRGBPQ9NV56 204 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 GTSE1Q9NYZ3 720 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 CD300AQ9UGN4 299 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 FBXW11Q9UKB1 542 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 SNX13Q9Y5W8 968 aa12.34□□□□□ -0.43
COL3A1-206ENST00000487010 PDCD11Q14690 1871 aaKnown RBP12.33□□□□□ -0.43
COL3A1-206ENST00000487010 FNDC1Q4ZHG4 1894 aaPredicted RBP12.33□□□□□ -0.43
COL3A1-206ENST00000487010 NUP205Q92621 2012 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 PRORSD1PA6NEY8 169 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 IRF6O14896 467 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 PSMD3O43242 534 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 JCHAINP01591 159 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 CD4P01730 458 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 HNRNPLP14866 589 aaKnown RBP eCLIP12.33□□□□□ -0.44
COL3A1-206ENST00000487010 NPR3P17342 541 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 GALK1P51570 392 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 COG7P83436 770 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 SULT2A1Q06520 285 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 RALGDSQ12967 914 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 CTBP1Q13363 440 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 FASTKQ14296 549 aaKnown RBP12.33□□□□□ -0.44
COL3A1-206ENST00000487010 PCID2Q5JVF3 399 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 MARCH8Q5T0T0 291 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 KRT80Q6KB66 452 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 HMBOX1Q6NT76 420 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 LPCAT2Q7L5N7 544 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 OSTM1Q86WC4 334 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 SIX6OS1Q8N1H7 587 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 RIN3Q8TB24 985 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 HM13Q8TCT9 377 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 TRPC4APQ8TEL6 797 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 RMND5BQ96G75 393 aaPredicted RBP12.33□□□□□ -0.44
COL3A1-206ENST00000487010 FAR2Q96K12 515 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 ZNF560Q96MR9 790 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 BIRC8Q96P09 236 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 MRPL57Q9BQC6 102 aaKnown RBP12.33□□□□□ -0.44
COL3A1-206ENST00000487010 C16orf70Q9BSU1 422 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 UNKQ9C0B0 810 aaKnown RBP12.33□□□□□ -0.44
COL3A1-206ENST00000487010 OSBPL2Q9H1P3 480 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 POMKQ9H5K3 350 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 SPAG4Q9NPE6 437 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 RHBDL2Q9NX52 303 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 FAM155AB1AL88 458 aaPredicted RBP12.33□□□□□ -0.44
COL3A1-206ENST00000487010 PSMD12O00232 456 aaPredicted RBP12.33□□□□□ -0.44
COL3A1-206ENST00000487010 NRP1O14786 923 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 UBDO15205 165 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 HTRA2O43464 458 aaPredicted RBP12.33□□□□□ -0.44
COL3A1-206ENST00000487010 RECQL4O94761 1208 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 NELFEP18615 380 aaKnown RBP12.33□□□□□ -0.44
COL3A1-206ENST00000487010 ATP5F1P24539 256 aaPredicted RBP12.33□□□□□ -0.44
COL3A1-206ENST00000487010 SCNN1BP51168 640 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 NDST2P52849 883 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 LPIN1Q14693 890 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 AGKQ53H12 422 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 POTEHQ6S545 545 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 DLK2Q6UY11 383 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 PAQR9Q6ZVX9 377 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 OTOP3Q7RTS5 596 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 KLHDC8BQ8IXV7 354 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 HEXDCQ8WVB3 486 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 DPF3Q92784 378 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 SGF29Q96ES7 293 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 CIB1Q99828 191 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 EFHD1Q9BUP0 239 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 ANKRD60Q9BZ19 345 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 NXF3Q9H4D5 531 aaKnown RBP12.33□□□□□ -0.44
COL3A1-206ENST00000487010 NOL11Q9H8H0 719 aaKnown RBP12.33□□□□□ -0.44
COL3A1-206ENST00000487010 MEAF6Q9HAF1 191 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 HACD3Q9P035 362 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 RBPJLQ9UBG7 517 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 CNOT6Q9ULM6 557 aaKnown RBP12.33□□□□□ -0.44
COL3A1-206ENST00000487010 FIS1Q9Y3D6 152 aa12.33□□□□□ -0.44
COL3A1-206ENST00000487010 A0A087X1B8 175 aa12.32□□□□□ -0.44
COL3A1-206ENST00000487010 PLOD2O00469 737 aa12.32□□□□□ -0.44
COL3A1-206ENST00000487010 HUS1O60921 280 aa12.32□□□□□ -0.44
COL3A1-206ENST00000487010 BMP10O95393 424 aa12.32□□□□□ -0.44
COL3A1-206ENST00000487010 SNRPB2P08579 225 aaKnown RBP12.32□□□□□ -0.44
COL3A1-206ENST00000487010 HDCP19113 662 aa12.32□□□□□ -0.44
COL3A1-206ENST00000487010 AKAP5P24588 427 aa12.32□□□□□ -0.44
COL3A1-206ENST00000487010 PNPLA4P41247 253 aa12.32□□□□□ -0.44
COL3A1-206ENST00000487010 ARCN1P48444 511 aaKnown RBP12.32□□□□□ -0.44
COL3A1-206ENST00000487010 TAF6P49848 677 aa12.32□□□□□ -0.44
COL3A1-206ENST00000487010 TKTL1P51854 596 aa12.32□□□□□ -0.44
COL3A1-206ENST00000487010 GRIK4Q16099 956 aa12.32□□□□□ -0.44
COL3A1-206ENST00000487010 PSMD5Q16401 504 aa12.32□□□□□ -0.44
COL3A1-206ENST00000487010 C6orf10Q5SRN2 563 aa12.32□□□□□ -0.44
COL3A1-206ENST00000487010 CYP2R1Q6VVX0 501 aa12.32□□□□□ -0.44
COL3A1-206ENST00000487010 CLEC20AQ6ZU45 233 aa12.32□□□□□ -0.44
COL3A1-206ENST00000487010 CATSPER4Q7RTX7 472 aa12.32□□□□□ -0.44
COL3A1-206ENST00000487010 ANKFN1Q8N957 763 aa12.32□□□□□ -0.44
COL3A1-206ENST00000487010 PPTC7Q8NI37 304 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms