RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, human

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR3-208	ENST00000474426	CAPSL	Q8WWF8	208 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	ST8SIA4	Q92187	359 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	ALG14	Q96F25	216 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	FER1L6-AS2	Q96M78	137 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	HEXIM2	Q96MH2	286 aa	Known RBP	3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	TRNT1	Q96Q11	434 aa	Known RBP	3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	B3GNT5	Q9BYG0	378 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	PARVA	Q9NVD7	372 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	FAM120C	Q9NX05	1096 aa	Known RBP	3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	MAGED2	Q9UNF1	606 aa	Predicted RBP	3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	ABCA10	Q8WWZ4	1543 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	KTN1	Q86UP2	1357 aa	Known RBP	3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	RHBDL1	O75783	438 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	SORBS2	O94875	1100 aa	Known RBP	3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	TGM6	O95932	706 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	PNP	P00491	289 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	FABP1	P07148	127 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	DBT	P11182	482 aa	Known RBP	3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	DARS	P14868	501 aa	Known RBP	3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	ATP5C1	P36542	298 aa	Known RBP	3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	NNMT	P40261	264 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	RAB15	P59190	212 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	RNASE9	P60153	205 aa	Known RBP	3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	ACTR3	P61158	418 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	RPS3A	P61247	264 aa	Known RBP	3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	IFITM2	Q01629	132 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	STK4	Q13043	487 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	PIGH	Q14442	188 aa	Predicted RBP	3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	MLIP	Q5VWP3	458 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	LRRC69	Q6ZNQ3	347 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	FAM122B	Q7Z309	247 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	PRUNE1	Q86TP1	453 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	NME9	Q86XW9	330 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	DCP1B	Q8IZD4	617 aa	Known RBP	3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	DSEL	Q8IZU8	1212 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	LNX2	Q8N448	690 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	CPEB3	Q8NE35	698 aa	Known RBP	3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	SETD7	Q8WTS6	366 aa	Known RBP	3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	DNAJA4	Q8WW22	397 aa	Predicted RBP	3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	NTAN1	Q96AB6	310 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	ZNF479	Q96JC4	524 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	FAR2	Q96K12	515 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	ZNF578	Q96N58	590 aa	Predicted RBP	3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	NT5C1A	Q9BXI3	368 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	TWSG1	Q9GZX9	223 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	RACGAP1	Q9H0H5	632 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	TRIM39	Q9HCM9	518 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	CYP39A1	Q9NYL5	469 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	SCML1	Q9UN30	329 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	RUVBL2	Q9Y230	463 aa	Known RBP	3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	PASK	Q96RG2	1323 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	LRPPRC	P42704	1394 aa	Known RBP	3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	BTBD17	A6NE02	478 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426		F8W036	122 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	FOXE1	O00358	373 aa	Predicted RBP	3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	EIF1AY	O14602	144 aa	Known RBP	3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	MEIS2	O14770	477 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	PLD2	O14939	933 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	GMFG	O60234	142 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	PFKFB2	O60825	505 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	NOS1AP	O75052	506 aa	Predicted RBP	3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	PPP6R2	O75170	966 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	VNN1	O95497	513 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	USP17L7	P0C7H9	530 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	INSRR	P14616	1297 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	CBR1	P16152	277 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	SERPINB1	P30740	379 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	PCYT1A	P49585	367 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	RASSF2	P50749	326 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	GALK1	P51570	392 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	HNRNPM	P52272	730 aa	Known RBP eCLIP	3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	SOX10	P56693	466 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	PRKD1	Q15139	912 aa	Predicted RBP	3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	TMEM44	Q2T9K0	475 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	ZDHHC20	Q5W0Z9	365 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	ARHGAP17	Q68EM7	881 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	SLFN12L	Q6IEE8	588 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	KLHL35	Q6PF15	583 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	APOA5	Q6Q788	366 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	ERN2	Q76MJ5	926 aa	Known RBP	3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	TAS2R42	Q7RTR8	314 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	PAGE2	Q7Z2X7	111 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	EFL1	Q7Z2Z2	1120 aa	Known RBP	3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	FGD2	Q7Z6J4	655 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	FBXO11	Q86XK2	927 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	CCDC103	Q8IW40	242 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	FMR1NB	Q8N0W7	255 aa	Predicted RBP	3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	ASCC1	Q8N9N2	400 aa	Known RBP	3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	TDRD5	Q8NAT2	981 aa	Known RBP	3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	C17orf47	Q8NEP4	570 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	HASPIN	Q8TF76	798 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	ZNF473	Q8WTR7	871 aa	Known RBP	3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	CD101	Q93033	1021 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	PHF21B	Q96EK2	531 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	GDAP1L1	Q96MZ0	367 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	ABHD1	Q96SE0	405 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	MMS19	Q96T76	1030 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	MCMBP	Q9BTE3	642 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	LRFN3	Q9BTN0	628 aa		3.53	□□□□□ -1.84
UBR3-208	ENST00000474426	CNPPD1	Q9BV87	410 aa		3.53	□□□□□ -1.84

Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms