RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 GGT7Q9UJ14 662 aa16.55■□□□□ 0.24
COL9A3-208ENST00000469802 RALYQ9UKM9 306 aaKnown RBP16.55■□□□□ 0.24
COL9A3-208ENST00000469802 POM121BA6NF01 834 aa16.54■□□□□ 0.24
COL9A3-208ENST00000469802 TRABD2BA6NFA1 517 aa16.54■□□□□ 0.24
COL9A3-208ENST00000469802 SMTNL1A8MU46 457 aa16.54■□□□□ 0.24
COL9A3-208ENST00000469802 RASA4BC9J798 803 aa16.54■□□□□ 0.24
COL9A3-208ENST00000469802 KRIT1O00522 736 aa16.54■□□□□ 0.24
COL9A3-208ENST00000469802 RASA4O43374 803 aa16.54■□□□□ 0.24
COL9A3-208ENST00000469802 BUB1O43683 1085 aa16.54■□□□□ 0.24
COL9A3-208ENST00000469802 CREB3O43889 395 aa16.54■□□□□ 0.24
COL9A3-208ENST00000469802 PIAS2O75928 621 aa16.54■□□□□ 0.24
COL9A3-208ENST00000469802 CKMT2P17540 419 aa16.54■□□□□ 0.24
COL9A3-208ENST00000469802 TNFAIP3P21580 790 aa16.54■□□□□ 0.24
COL9A3-208ENST00000469802 DGKAP23743 735 aa16.54■□□□□ 0.24
COL9A3-208ENST00000469802 ACP1P24666 158 aa16.54■□□□□ 0.24
COL9A3-208ENST00000469802 ZNF211Q13398 564 aaPredicted RBP16.54■□□□□ 0.24
COL9A3-208ENST00000469802 Q6ZSR6 202 aa16.54■□□□□ 0.24
COL9A3-208ENST00000469802 PTAR1Q7Z6K3 402 aaPredicted RBP16.54■□□□□ 0.24
COL9A3-208ENST00000469802 DCP2Q8IU60 420 aaKnown RBP16.54■□□□□ 0.24
COL9A3-208ENST00000469802 RYBPQ8N488 228 aaPredicted RBP16.54■□□□□ 0.24
COL9A3-208ENST00000469802 ARFGAP1Q8N6T3 406 aa16.54■□□□□ 0.24
COL9A3-208ENST00000469802 PDCD7Q8N8D1 485 aaKnown RBP16.54■□□□□ 0.24
COL9A3-208ENST00000469802 DENND6BQ8NEG7 585 aa16.54■□□□□ 0.24
COL9A3-208ENST00000469802 OR4C6Q8NH72 309 aa16.54■□□□□ 0.24
COL9A3-208ENST00000469802 RFFLQ8WZ73 363 aa16.54■□□□□ 0.24
COL9A3-208ENST00000469802 LENG8Q96PV6 779 aaPredicted RBP16.54■□□□□ 0.24
COL9A3-208ENST00000469802 LRRC19Q9H756 370 aa16.54■□□□□ 0.24
COL9A3-208ENST00000469802 CATSPERBQ9H7T0 1116 aa16.54■□□□□ 0.24
COL9A3-208ENST00000469802 CAAP1Q9H8G2 361 aa16.54■□□□□ 0.24
COL9A3-208ENST00000469802 PARVAQ9NVD7 372 aa16.54■□□□□ 0.24
COL9A3-208ENST00000469802 UCKL1Q9NWZ5 548 aa16.54■□□□□ 0.24
COL9A3-208ENST00000469802 AIPL1Q9NZN9 384 aa16.54■□□□□ 0.24
COL9A3-208ENST00000469802 LHX3Q9UBR4 397 aa16.54■□□□□ 0.24
COL9A3-208ENST00000469802 ITM2BQ9Y287 266 aa16.54■□□□□ 0.24
COL9A3-208ENST00000469802 MFHAS1Q9Y4C4 1052 aa16.54■□□□□ 0.24
COL9A3-208ENST00000469802 GPSM3Q9Y4H4 160 aa16.54■□□□□ 0.24
COL9A3-208ENST00000469802 EIF3CLB5ME19 914 aaKnown RBP16.53■□□□□ 0.24
COL9A3-208ENST00000469802 ATMINO43313 823 aaPredicted RBP16.53■□□□□ 0.24
COL9A3-208ENST00000469802 SIGLEC6O43699 453 aa16.53■□□□□ 0.24
COL9A3-208ENST00000469802 IGSF6O95976 241 aa16.53■□□□□ 0.24
COL9A3-208ENST00000469802 PAK4O96013 591 aaPredicted RBP16.53■□□□□ 0.24
COL9A3-208ENST00000469802 GZMAP12544 262 aa16.53■□□□□ 0.24
COL9A3-208ENST00000469802 HNF1BP35680 557 aa16.53■□□□□ 0.24
COL9A3-208ENST00000469802 ZNF165P49910 485 aa16.53■□□□□ 0.24
COL9A3-208ENST00000469802 CLDN6P56747 220 aa16.53■□□□□ 0.24
COL9A3-208ENST00000469802 MAPK8IP2Q13387 824 aaPredicted RBP16.53■□□□□ 0.24
COL9A3-208ENST00000469802 FZD2Q14332 565 aa16.53■□□□□ 0.24
COL9A3-208ENST00000469802 IQCB1Q15051 598 aa16.53■□□□□ 0.24
COL9A3-208ENST00000469802 ASIC2Q16515 512 aa16.53■□□□□ 0.24
COL9A3-208ENST00000469802 CAVIN1Q6NZI2 390 aaKnown RBP16.53■□□□□ 0.24
COL9A3-208ENST00000469802 GDPD4Q6W3E5 623 aa16.53■□□□□ 0.24
COL9A3-208ENST00000469802 CYP4V2Q6ZWL3 525 aaPredicted RBP16.53■□□□□ 0.24
COL9A3-208ENST00000469802 ZNF571Q7Z3V5 609 aaPredicted RBP16.53■□□□□ 0.24
COL9A3-208ENST00000469802 FNIP1Q8TF40 1166 aa16.53■□□□□ 0.24
COL9A3-208ENST00000469802 ARHGEF26Q96DR7 871 aa16.53■□□□□ 0.24
COL9A3-208ENST00000469802 KLHL32Q96NJ5 620 aa16.53■□□□□ 0.24
COL9A3-208ENST00000469802 NAP1L5Q96NT1 182 aaPredicted RBP16.53■□□□□ 0.24
COL9A3-208ENST00000469802 PEBP4Q96S96 227 aa16.53■□□□□ 0.24
COL9A3-208ENST00000469802 EIF3CQ99613 913 aaKnown RBP16.53■□□□□ 0.24
COL9A3-208ENST00000469802 HAUS4Q9H6D7 363 aa16.53■□□□□ 0.24
COL9A3-208ENST00000469802 DKK3Q9UBP4 350 aa16.53■□□□□ 0.24
COL9A3-208ENST00000469802 AP4E1Q9UPM8 1137 aa16.53■□□□□ 0.24
COL9A3-208ENST00000469802 SPTY2D1-AS1A0A0U1RR47 76 aa16.52■□□□□ 0.24
COL9A3-208ENST00000469802 TMEM191CA6NGB0 347 aa16.52■□□□□ 0.24
COL9A3-208ENST00000469802 IGLON5A6NGN9 336 aa16.52■□□□□ 0.24
COL9A3-208ENST00000469802 TMCO5BA8MYB1 307 aa16.52■□□□□ 0.24
COL9A3-208ENST00000469802 NME1P15531 152 aaKnown RBP16.52■□□□□ 0.24
COL9A3-208ENST00000469802 DESP17661 470 aa16.52■□□□□ 0.24
COL9A3-208ENST00000469802 PSMA2P25787 234 aa16.52■□□□□ 0.24
COL9A3-208ENST00000469802 RABIFP47224 123 aa16.52■□□□□ 0.24
COL9A3-208ENST00000469802 TPI1P60174 286 aa16.52■□□□□ 0.24
COL9A3-208ENST00000469802 RHOAP61586 193 aa16.52■□□□□ 0.24
COL9A3-208ENST00000469802 CA9Q16790 459 aa16.52■□□□□ 0.24
COL9A3-208ENST00000469802 TPRG1LQ5T0D9 272 aa16.52■□□□□ 0.24
COL9A3-208ENST00000469802 HES3Q5TGS1 186 aa16.52■□□□□ 0.24
COL9A3-208ENST00000469802 PARGQ86W56 976 aa16.52■□□□□ 0.24
COL9A3-208ENST00000469802 CPEB1Q9BZB8 566 aaKnown RBP16.52■□□□□ 0.24
COL9A3-208ENST00000469802 GPATCH2LQ9NWQ4 482 aa16.52■□□□□ 0.24
COL9A3-208ENST00000469802 URB1O60287 2271 aaKnown RBP16.51■□□□□ 0.23
COL9A3-208ENST00000469802 TSPAN11A1L157 253 aa16.51■□□□□ 0.23
COL9A3-208ENST00000469802 DDX3XO00571 662 aaKnown RBP eCLIP16.51■□□□□ 0.23
COL9A3-208ENST00000469802 NDST2P52849 883 aa16.51■□□□□ 0.23
COL9A3-208ENST00000469802 PFN3P60673 137 aa16.51■□□□□ 0.23
COL9A3-208ENST00000469802 CYTH1Q15438 398 aa16.51■□□□□ 0.23
COL9A3-208ENST00000469802 FILIP1LQ4L180 1135 aa16.51■□□□□ 0.23
COL9A3-208ENST00000469802 FIGNQ5HY92 759 aa16.51■□□□□ 0.23
COL9A3-208ENST00000469802 LRRC73Q5JTD7 316 aa16.51■□□□□ 0.23
COL9A3-208ENST00000469802 AFMIDQ63HM1 303 aa16.51■□□□□ 0.23
COL9A3-208ENST00000469802 ZNF354CQ86Y25 554 aa16.51■□□□□ 0.23
COL9A3-208ENST00000469802 DNAAF5Q86Y56 855 aa16.51■□□□□ 0.23
COL9A3-208ENST00000469802 CACTIN-AS1Q8N1I8 211 aa16.51■□□□□ 0.23
COL9A3-208ENST00000469802 NETO2Q8NC67 525 aa16.51■□□□□ 0.23
COL9A3-208ENST00000469802 CENPTQ96BT3 561 aa16.51■□□□□ 0.23
COL9A3-208ENST00000469802 SNRNP25Q9BV90 132 aaKnown RBP16.51■□□□□ 0.23
COL9A3-208ENST00000469802 EDEM3Q9BZQ6 932 aa16.51■□□□□ 0.23
COL9A3-208ENST00000469802 TRIM7Q9C029 511 aa16.51■□□□□ 0.23
COL9A3-208ENST00000469802 NLGN3Q9NZ94 848 aa16.51■□□□□ 0.23
COL9A3-208ENST00000469802 RAXQ9Y2V3 346 aa16.51■□□□□ 0.23
COL9A3-208ENST00000469802 SHROOM3Q8TF72 1996 aa16.51■□□□□ 0.23
COL9A3-208ENST00000469802 CACNA1GO43497 2377 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms