RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 LOC285095A0A1B0GVY8 99 aa19.19■□□□□ 0.66
SMC4-209ENST00000468653 CCDC78A2IDD5 438 aa19.19■□□□□ 0.66
SMC4-209ENST00000468653 NEDD8-MDP1E9PL57 170 aa19.19■□□□□ 0.66
SMC4-209ENST00000468653 INSIG1O15503 277 aa19.19■□□□□ 0.66
SMC4-209ENST00000468653 SHOX2O60902 331 aaPredicted RBP19.19■□□□□ 0.66
SMC4-209ENST00000468653 CD160O95971 181 aa19.19■□□□□ 0.66
SMC4-209ENST00000468653 MT-ND3P03897 115 aa19.19■□□□□ 0.66
SMC4-209ENST00000468653 ADRA1DP25100 572 aa19.19■□□□□ 0.66
SMC4-209ENST00000468653 SMAD1Q15797 465 aaKnown RBP19.19■□□□□ 0.66
SMC4-209ENST00000468653 RNF43Q68DV7 783 aa19.19■□□□□ 0.66
SMC4-209ENST00000468653 MARK2Q7KZI7 788 aaKnown RBP19.19■□□□□ 0.66
SMC4-209ENST00000468653 RNF135Q8IUD6 432 aa19.19■□□□□ 0.66
SMC4-209ENST00000468653 CELF5Q8N6W0 485 aaKnown RBP19.19■□□□□ 0.66
SMC4-209ENST00000468653 IRF7Q92985 503 aa19.19■□□□□ 0.66
SMC4-209ENST00000468653 TIFAQ96CG3 184 aa19.19■□□□□ 0.66
SMC4-209ENST00000468653 BBS2Q9BXC9 721 aa19.19■□□□□ 0.66
SMC4-209ENST00000468653 LINC00597Q9H2U6 94 aa19.19■□□□□ 0.66
SMC4-209ENST00000468653 IL1RAPL1Q9NZN1 696 aa19.19■□□□□ 0.66
SMC4-209ENST00000468653 TCAF1Q9Y4C2 921 aa19.19■□□□□ 0.66
SMC4-209ENST00000468653 SLC9A3R1O14745 358 aaPredicted RBP19.18■□□□□ 0.66
SMC4-209ENST00000468653 KRT38O76015 456 aa19.18■□□□□ 0.66
SMC4-209ENST00000468653 PAPLNO95428 1278 aa19.18■□□□□ 0.66
SMC4-209ENST00000468653 EPOP01588 193 aa19.18■□□□□ 0.66
SMC4-209ENST00000468653 SNRPAP09012 282 aaKnown RBP19.18■□□□□ 0.66
SMC4-209ENST00000468653 CD70P32970 193 aa19.18■□□□□ 0.66
SMC4-209ENST00000468653 SERPINB9P50453 376 aa19.18■□□□□ 0.66
SMC4-209ENST00000468653 RHOAP61586 193 aa19.18■□□□□ 0.66
SMC4-209ENST00000468653 SLC14A2Q15849 920 aa19.18■□□□□ 0.66
SMC4-209ENST00000468653 SIRPB2Q5JXA9 342 aa19.18■□□□□ 0.66
SMC4-209ENST00000468653 C4orf33Q8N1A6 199 aa19.18■□□□□ 0.66
SMC4-209ENST00000468653 MZB1Q8WU39 189 aa19.18■□□□□ 0.66
SMC4-209ENST00000468653 ACDQ96AP0 544 aa19.18■□□□□ 0.66
SMC4-209ENST00000468653 OTUB2Q96DC9 234 aa19.18■□□□□ 0.66
SMC4-209ENST00000468653 NUDCD1Q96RS6 583 aa19.18■□□□□ 0.66
SMC4-209ENST00000468653 KIF9Q9HAQ2 790 aa19.18■□□□□ 0.66
SMC4-209ENST00000468653 MRM3Q9HC36 420 aaKnown RBP19.18■□□□□ 0.66
SMC4-209ENST00000468653 SPHK2Q9NRA0 654 aa19.18■□□□□ 0.66
SMC4-209ENST00000468653 C20orf96Q9NUD7 363 aaPredicted RBP19.18■□□□□ 0.66
SMC4-209ENST00000468653 INTS9Q9NV88 658 aaKnown RBP19.18■□□□□ 0.66
SMC4-209ENST00000468653 TXNDC16Q9P2K2 825 aa19.18■□□□□ 0.66
SMC4-209ENST00000468653 WNT6Q9Y6F9 365 aa19.18■□□□□ 0.66
SMC4-209ENST00000468653 ATG2AQ2TAZ0 1938 aa19.18■□□□□ 0.66
SMC4-209ENST00000468653 HEATR9A2RTY3 570 aa19.17■□□□□ 0.66
SMC4-209ENST00000468653 PENKP01210 267 aaPredicted RBP19.17■□□□□ 0.66
SMC4-209ENST00000468653 KRT4P19013 534 aa19.17■□□□□ 0.66
SMC4-209ENST00000468653 CR2P20023 1033 aa19.17■□□□□ 0.66
SMC4-209ENST00000468653 HLA-DPA1P20036 260 aa19.17■□□□□ 0.66
SMC4-209ENST00000468653 FSHRP23945 695 aa19.17■□□□□ 0.66
SMC4-209ENST00000468653 SLC12A1Q13621 1099 aa19.17■□□□□ 0.66
SMC4-209ENST00000468653 PLEKHG6Q3KR16 790 aa19.17■□□□□ 0.66
SMC4-209ENST00000468653 ARMC3Q5W041 872 aa19.17■□□□□ 0.66
SMC4-209ENST00000468653 ANKRD42Q8N9B4 389 aa19.17■□□□□ 0.66
SMC4-209ENST00000468653 ZNF778Q96MU6 729 aa19.17■□□□□ 0.66
SMC4-209ENST00000468653 APOL5Q9BWW9 433 aa19.17■□□□□ 0.66
SMC4-209ENST00000468653 ABCB8Q9NUT2 735 aa19.17■□□□□ 0.66
SMC4-209ENST00000468653 SLC17A6Q9P2U8 582 aa19.17■□□□□ 0.66
SMC4-209ENST00000468653 FCF1Q9Y324 198 aaKnown RBP19.17■□□□□ 0.66
SMC4-209ENST00000468653 TRIM49D1C9J1S8 452 aa19.16■□□□□ 0.66
SMC4-209ENST00000468653 SPAG7O75391 227 aa19.16■□□□□ 0.66
SMC4-209ENST00000468653 FGF1P05230 155 aa19.16■□□□□ 0.66
SMC4-209ENST00000468653 ATXN1LP0C7T5 689 aaKnown RBP19.16■□□□□ 0.66
SMC4-209ENST00000468653 PLK1P53350 603 aa19.16■□□□□ 0.66
SMC4-209ENST00000468653 KCNMB4Q86W47 210 aa19.16■□□□□ 0.66
SMC4-209ENST00000468653 TDHQ8IZJ6 230 aa19.16■□□□□ 0.66
SMC4-209ENST00000468653 NKIRAS1Q9NYS0 192 aa19.16■□□□□ 0.66
SMC4-209ENST00000468653 LHX3Q9UBR4 397 aa19.16■□□□□ 0.66
SMC4-209ENST00000468653 PRKAG3Q9UGI9 489 aa19.16■□□□□ 0.66
SMC4-209ENST00000468653 SMG5Q9UPR3 1016 aaKnown RBP19.16■□□□□ 0.66
SMC4-209ENST00000468653 MIA3Q5JRA6 1907 aa19.16■□□□□ 0.66
SMC4-209ENST00000468653 NDST3O95803 873 aa19.16■□□□□ 0.66
SMC4-209ENST00000468653 MT-CO1P00395 513 aa19.16■□□□□ 0.66
SMC4-209ENST00000468653 CNTFP26441 200 aa19.16■□□□□ 0.66
SMC4-209ENST00000468653 NSUN2Q08J23 767 aaKnown RBP eCLIP19.16■□□□□ 0.66
SMC4-209ENST00000468653 HSP90AA5PQ58FG0 334 aa19.16■□□□□ 0.66
SMC4-209ENST00000468653 LY6G5CQ5SRR4 150 aa19.16■□□□□ 0.66
SMC4-209ENST00000468653 PACS1Q6VY07 963 aa19.16■□□□□ 0.66
SMC4-209ENST00000468653 ADGRG2Q8IZP9 1017 aa19.16■□□□□ 0.66
SMC4-209ENST00000468653 ZNF557Q8N988 423 aaPredicted RBP19.16■□□□□ 0.66
SMC4-209ENST00000468653 MGARPQ8TDB4 240 aa19.16■□□□□ 0.66
SMC4-209ENST00000468653 CENPTQ96BT3 561 aa19.16■□□□□ 0.66
SMC4-209ENST00000468653 MTBPQ96DY7 904 aa19.16■□□□□ 0.66
SMC4-209ENST00000468653 RANBP9Q96S59 729 aa19.16■□□□□ 0.66
SMC4-209ENST00000468653 ZKSCAN7Q9P0L1 754 aaPredicted RBP19.16■□□□□ 0.66
SMC4-209ENST00000468653 FAM47DPA6NHR8 397 aa19.15■□□□□ 0.66
SMC4-209ENST00000468653 TYRP14679 529 aa19.15■□□□□ 0.66
SMC4-209ENST00000468653 PAMP19021 973 aa19.15■□□□□ 0.66
SMC4-209ENST00000468653 WEE1P30291 646 aa19.15■□□□□ 0.66
SMC4-209ENST00000468653 LSP1P33241 339 aa19.15■□□□□ 0.66
SMC4-209ENST00000468653 BMP8BP34820 402 aa19.15■□□□□ 0.66
SMC4-209ENST00000468653 GALNT3Q14435 633 aa19.15■□□□□ 0.66
SMC4-209ENST00000468653 PITRM1Q5JRX3 1037 aa19.15■□□□□ 0.66
SMC4-209ENST00000468653 PDPK2PQ6A1A2 396 aa19.15■□□□□ 0.66
SMC4-209ENST00000468653 ESRP1Q6NXG1 681 aaKnown RBP19.15■□□□□ 0.66
SMC4-209ENST00000468653 NPAS3Q8IXF0 933 aa19.15■□□□□ 0.66
SMC4-209ENST00000468653 LMLNQ96KR4 655 aa19.15■□□□□ 0.66
SMC4-209ENST00000468653 CPNE1Q99829 537 aa19.15■□□□□ 0.66
SMC4-209ENST00000468653 NSUN3Q9H649 340 aaKnown RBP19.15■□□□□ 0.66
SMC4-209ENST00000468653 INTS6Q9UL03 887 aaKnown RBP19.15■□□□□ 0.66
SMC4-209ENST00000468653 CHKBQ9Y259 395 aa19.15■□□□□ 0.66
SMC4-209ENST00000468653 ARIH1Q9Y4X5 557 aaPredicted RBP19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms