RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 MAGEA12P43365 314 aa11.83□□□□□ -0.51
CPSF3-202ENST00000460593 GALNT2Q10471 571 aa11.83□□□□□ -0.51
CPSF3-202ENST00000460593 CTBP1Q13363 440 aa11.83□□□□□ -0.51
CPSF3-202ENST00000460593 SOWAHAQ2M3V2 549 aa11.83□□□□□ -0.51
CPSF3-202ENST00000460593 CLEC6AQ6EIG7 209 aa11.83□□□□□ -0.51
CPSF3-202ENST00000460593 NIPAL1Q6NVV3 410 aa11.83□□□□□ -0.51
CPSF3-202ENST00000460593 RWDD4Q6NW29 188 aaKnown RBP11.83□□□□□ -0.51
CPSF3-202ENST00000460593 TMEM110Q86TL2 294 aa11.83□□□□□ -0.51
CPSF3-202ENST00000460593 KCNMB4Q86W47 210 aa11.83□□□□□ -0.51
CPSF3-202ENST00000460593 CMTR2Q8IYT2 770 aaKnown RBP11.83□□□□□ -0.51
CPSF3-202ENST00000460593 PBXIP1Q96AQ6 731 aa11.83□□□□□ -0.51
CPSF3-202ENST00000460593 GPRASP2Q96D09 838 aa11.83□□□□□ -0.51
CPSF3-202ENST00000460593 BCO2Q9BYV7 579 aa11.83□□□□□ -0.51
CPSF3-202ENST00000460593 PRDM12Q9H4Q4 367 aa11.83□□□□□ -0.51
CPSF3-202ENST00000460593 RPAP3Q9H6T3 665 aaPredicted RBP11.83□□□□□ -0.51
CPSF3-202ENST00000460593 SPAG4Q9NPE6 437 aa11.83□□□□□ -0.51
CPSF3-202ENST00000460593 GID8Q9NWU2 228 aa11.83□□□□□ -0.51
CPSF3-202ENST00000460593 POU2F3Q9UKI9 436 aa11.83□□□□□ -0.51
CPSF3-202ENST00000460593 KDM1AO60341 852 aa11.83□□□□□ -0.52
CPSF3-202ENST00000460593 NPR1P16066 1061 aa11.83□□□□□ -0.52
CPSF3-202ENST00000460593 KCNA5P22460 613 aa11.83□□□□□ -0.52
CPSF3-202ENST00000460593 DCKP27707 260 aa11.83□□□□□ -0.52
CPSF3-202ENST00000460593 OPRL1P41146 370 aa11.83□□□□□ -0.52
CPSF3-202ENST00000460593 CD151P48509 253 aa11.83□□□□□ -0.52
CPSF3-202ENST00000460593 NKX2-5P52952 324 aaPredicted RBP11.83□□□□□ -0.52
CPSF3-202ENST00000460593 MPP1Q00013 466 aa11.83□□□□□ -0.52
CPSF3-202ENST00000460593 IFRD2Q12894 506 aaPredicted RBP11.83□□□□□ -0.52
CPSF3-202ENST00000460593 PRR23BQ6ZRT6 265 aa11.83□□□□□ -0.52
CPSF3-202ENST00000460593 DSG4Q86SJ6 1040 aa11.83□□□□□ -0.52
CPSF3-202ENST00000460593 CEP97Q8IW35 865 aa11.83□□□□□ -0.52
CPSF3-202ENST00000460593 DENND6AQ8IWF6 608 aa11.83□□□□□ -0.52
CPSF3-202ENST00000460593 CENPLQ8N0S6 344 aaPredicted RBP11.83□□□□□ -0.52
CPSF3-202ENST00000460593 SHCBP1Q8NEM2 672 aa11.83□□□□□ -0.52
CPSF3-202ENST00000460593 EPS8L2Q9H6S3 715 aa11.83□□□□□ -0.52
CPSF3-202ENST00000460593 MINDY3Q9H8M7 445 aa11.83□□□□□ -0.52
CPSF3-202ENST00000460593 KLHL8Q9P2G9 620 aaPredicted RBP11.83□□□□□ -0.52
CPSF3-202ENST00000460593 VANGL2Q9ULK5 521 aa11.83□□□□□ -0.52
CPSF3-202ENST00000460593 ERGIC3Q9Y282 383 aa11.83□□□□□ -0.52
CPSF3-202ENST00000460593 GPC6Q9Y625 555 aaPredicted RBP11.83□□□□□ -0.52
CPSF3-202ENST00000460593 SOBPA7XYQ1 873 aa11.83□□□□□ -0.52
CPSF3-202ENST00000460593 AQP9O43315 295 aa11.83□□□□□ -0.52
CPSF3-202ENST00000460593 PLA2G6O60733 806 aa11.83□□□□□ -0.52
CPSF3-202ENST00000460593 POU5F1BQ06416 359 aa11.83□□□□□ -0.52
CPSF3-202ENST00000460593 RFTN1Q14699 578 aaPredicted RBP11.83□□□□□ -0.52
CPSF3-202ENST00000460593 MOGQ16653 247 aa11.83□□□□□ -0.52
CPSF3-202ENST00000460593 ERMP1Q7Z2K6 904 aa11.83□□□□□ -0.52
CPSF3-202ENST00000460593 RETREG3Q86VR2 466 aa11.83□□□□□ -0.52
CPSF3-202ENST00000460593 CADM3Q8N126 398 aa11.83□□□□□ -0.52
CPSF3-202ENST00000460593 TXNDC5Q8NBS9 432 aaKnown RBP11.83□□□□□ -0.52
CPSF3-202ENST00000460593 RDM1Q8NG50 284 aa11.83□□□□□ -0.52
CPSF3-202ENST00000460593 FAM151AQ8WW52 585 aa11.83□□□□□ -0.52
CPSF3-202ENST00000460593 KCNN1Q92952 543 aa11.83□□□□□ -0.52
CPSF3-202ENST00000460593 C1QTNF1Q9BXJ1 281 aa11.83□□□□□ -0.52
CPSF3-202ENST00000460593 FTHL17Q9BXU8 183 aa11.83□□□□□ -0.52
CPSF3-202ENST00000460593 CXCL16Q9H2A7 254 aa11.83□□□□□ -0.52
CPSF3-202ENST00000460593 FAM155AB1AL88 458 aaPredicted RBP11.82□□□□□ -0.52
CPSF3-202ENST00000460593 NPM3O75607 178 aaKnown RBP11.82□□□□□ -0.52
CPSF3-202ENST00000460593 SLC35E2BP0CK96 405 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 CCNA2P20248 432 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 MYF6P23409 242 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 LAMTOR4Q0VGL1 99 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 MAPK11Q15759 364 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 CYS1Q717R9 158 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 SPPL2BQ8TCT7 592 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 PCYT2Q99447 389 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 MRIQ9BWK5 157 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 KLHL25Q9H0H3 589 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 NANOGQ9H9S0 305 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 CD300AQ9UGN4 299 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 USP22Q9UPT9 525 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 MGAMO43451 1857 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.82□□□□□ -0.52
CPSF3-202ENST00000460593 UBDO15205 165 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 WDR46O15213 610 aaKnown RBP11.82□□□□□ -0.52
CPSF3-202ENST00000460593 XYLBO75191 536 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 SRP72O76094 671 aaKnown RBP11.82□□□□□ -0.52
CPSF3-202ENST00000460593 BCL10O95999 233 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 PGK1P00558 417 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 CHRNA5P30532 468 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 APLP1P51693 650 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 FPGSQ05932 587 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 CBLBQ13191 982 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 SPIDRQ14159 915 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 HERC3Q15034 1050 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 SURF1Q15526 300 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 OTUD3Q5T2D3 398 aaPredicted RBP11.82□□□□□ -0.52
CPSF3-202ENST00000460593 MFSD6LQ8IWD5 586 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 ANKFN1Q8N957 763 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 PHF21BQ96EK2 531 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 TBCBQ99426 244 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 POMKQ9H5K3 350 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 EVLQ9UI08 416 aaPredicted RBP11.82□□□□□ -0.52
CPSF3-202ENST00000460593 CROTQ9UKG9 612 aa11.82□□□□□ -0.52
CPSF3-202ENST00000460593 TRPC5Q9UL62 973 aaPredicted RBP11.82□□□□□ -0.52
CPSF3-202ENST00000460593 MTF2Q9Y483 593 aaPredicted RBP11.82□□□□□ -0.52
CPSF3-202ENST00000460593 MAGED1Q9Y5V3 778 aaPredicted RBP11.82□□□□□ -0.52
CPSF3-202ENST00000460593 NR5A2O00482 541 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 CNOT3O75175 753 aaKnown RBP11.81□□□□□ -0.52
CPSF3-202ENST00000460593 GPC4O75487 556 aa11.81□□□□□ -0.52
CPSF3-202ENST00000460593 MPOP05164 745 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms