RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 PIK3R6Q5UE93 754 aa5.54□□□□□ -1.52
VPS41-209ENST00000457055 GKAP1Q5VSY0 366 aaPredicted RBP5.54□□□□□ -1.52
VPS41-209ENST00000457055 NEPROQ6NW34 567 aa5.54□□□□□ -1.52
VPS41-209ENST00000457055 UBE2R2Q712K3 238 aaPredicted RBP5.54□□□□□ -1.52
VPS41-209ENST00000457055 KCTD1Q719H9 257 aa5.54□□□□□ -1.52
VPS41-209ENST00000457055 TAS2R42Q7RTR8 314 aa5.54□□□□□ -1.52
VPS41-209ENST00000457055 TUSC5Q8IXB3 177 aa5.54□□□□□ -1.52
VPS41-209ENST00000457055 FBXW8Q8N3Y1 598 aa5.54□□□□□ -1.52
VPS41-209ENST00000457055 PIK3C3Q8NEB9 887 aa5.54□□□□□ -1.52
VPS41-209ENST00000457055 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.54□□□□□ -1.52
VPS41-209ENST00000457055 RAB7BQ96AH8 199 aa5.54□□□□□ -1.52
VPS41-209ENST00000457055 SLC22A18Q96BI1 424 aa5.54□□□□□ -1.52
VPS41-209ENST00000457055 TRIM43Q96BQ3 446 aaPredicted RBP5.54□□□□□ -1.52
VPS41-209ENST00000457055 CYFIP2Q96F07 1278 aa5.54□□□□□ -1.52
VPS41-209ENST00000457055 EDC3Q96F86 508 aaKnown RBP5.54□□□□□ -1.52
VPS41-209ENST00000457055 CHMP6Q96FZ7 201 aa5.54□□□□□ -1.52
VPS41-209ENST00000457055 ADOQ96SZ5 270 aa5.54□□□□□ -1.52
VPS41-209ENST00000457055 FAM118BQ9BPY3 351 aa5.54□□□□□ -1.52
VPS41-209ENST00000457055 ERP44Q9BS26 406 aa5.54□□□□□ -1.52
VPS41-209ENST00000457055 MLPHQ9BV36 600 aaPredicted RBP5.54□□□□□ -1.52
VPS41-209ENST00000457055 NTMT1Q9BV86 223 aa5.54□□□□□ -1.52
VPS41-209ENST00000457055 CARD6Q9BX69 1037 aa5.54□□□□□ -1.52
VPS41-209ENST00000457055 TTYH3Q9C0H2 523 aa5.54□□□□□ -1.52
VPS41-209ENST00000457055 DRC3Q9H069 523 aa5.54□□□□□ -1.52
VPS41-209ENST00000457055 SLITRK6Q9H5Y7 841 aa5.54□□□□□ -1.52
VPS41-209ENST00000457055 NTN4Q9HB63 628 aa5.54□□□□□ -1.52
VPS41-209ENST00000457055 MRM3Q9HC36 420 aaKnown RBP5.54□□□□□ -1.52
VPS41-209ENST00000457055 TUFT1Q9NNX1 390 aa5.54□□□□□ -1.52
VPS41-209ENST00000457055 BATF3Q9NR55 127 aa5.54□□□□□ -1.52
VPS41-209ENST00000457055 IL37Q9NZH6 218 aa5.54□□□□□ -1.52
VPS41-209ENST00000457055 SENP1Q9P0U3 644 aa5.54□□□□□ -1.52
VPS41-209ENST00000457055 DPP7Q9UHL4 492 aa5.54□□□□□ -1.52
VPS41-209ENST00000457055 ZNF215Q9UL58 517 aaPredicted RBP5.54□□□□□ -1.52
VPS41-209ENST00000457055 GAB2Q9UQC2 676 aa5.54□□□□□ -1.52
VPS41-209ENST00000457055 SNX9Q9Y5X1 595 aa5.54□□□□□ -1.52
VPS41-209ENST00000457055 DUOX2Q9NRD8 1548 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 ADGRL2O95490 1459 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 ARHGEF37A1IGU5 675 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 MACROD2A1Z1Q3 448 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 FOXO6A8MYZ6 492 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 FAM47E-STBD1D6RA91 191 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 TO15178 435 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 RAD51BO15315 384 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 TP73O15350 636 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 CD3EAPO15446 510 aaKnown RBP5.53□□□□□ -1.52
VPS41-209ENST00000457055 CA12O43570 354 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 GMFGO60234 142 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 PCDHGA12O60330 932 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 CAMTA2O94983 1202 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 SCGB1D1O95968 90 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 SOD2P04179 222 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 GALTP07902 379 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 HMOX1P09601 288 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 ZNF888P0CJ79 500 aaPredicted RBP5.53□□□□□ -1.52
VPS41-209ENST00000457055 PABPC1P11940 636 aaKnown RBP5.53□□□□□ -1.52
VPS41-209ENST00000457055 ACSL1P33121 698 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 RFC2P35250 354 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 RABIFP47224 123 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 PITPNBP48739 271 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 CAMLGP49069 296 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 ZNF81P51508 661 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 EPHA5P54756 1037 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 INHBCP55103 352 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 TRA2BP62995 288 aaKnown RBP5.53□□□□□ -1.52
VPS41-209ENST00000457055 VAMP2P63027 116 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 LGALS3BPQ08380 585 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 STK4Q13043 487 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 ITGB3BPQ13352 177 aaPredicted RBP5.53□□□□□ -1.52
VPS41-209ENST00000457055 KCNC3Q14003 757 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 PFKFB4Q16877 469 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 TIGD6Q17RP2 521 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 SNX30Q5VWJ9 437 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 STYK1Q6J9G0 422 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 MTFR2Q6P444 385 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 CASC4Q6P4E1 433 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 STXBP4Q6ZWJ1 553 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 C16orf59Q7L2K0 433 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 TTC7BQ86TV6 843 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 C2CD5Q86YS7 1000 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 LRRC34Q8IZ02 419 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 SRBD1Q8N5C6 995 aaKnown RBP5.53□□□□□ -1.52
VPS41-209ENST00000457055 HIPK4Q8NE63 616 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 TRPV1Q8NER1 839 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 OR9A1PQ8NGU1 263 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 URGCPQ8TCY9 931 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 AUTS2Q8WXX7 1259 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 ST8SIA4Q92187 359 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 STAMQ92783 540 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 NEIL1Q96FI4 390 aaPredicted RBP5.53□□□□□ -1.52
VPS41-209ENST00000457055 VCPIP1Q96JH7 1222 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 PGBD1Q96JS3 809 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 TSNARE1Q96NA8 513 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 SLC2A13Q96QE2 648 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 RAD9AQ99638 391 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 BRIP1Q9BX63 1249 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 NUF2Q9BZD4 464 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 SHCBP1LQ9BZQ2 653 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 FAM107BQ9H098 131 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 WDR26Q9H7D7 661 aa5.53□□□□□ -1.52
VPS41-209ENST00000457055 KIF9Q9HAQ2 790 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms