RNA–Protein interactions for RNA: ENST00000452489.6

PTPA-223, Transcript of protein phosphatase 2 phosphatase activator, human

TSL 1 (best) BASIC

Gene PTPA, Length 2,526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPA-223	ENST00000452489	NDNF	Q8TB73	568 aa		18.85	■□□□□ 0.61
PTPA-223	ENST00000452489	CLPB	Q9H078	707 aa		18.85	■□□□□ 0.61
PTPA-223	ENST00000452489	MRPL40	Q9NQ50	206 aa	Known RBP	18.85	■□□□□ 0.61
PTPA-223	ENST00000452489	CCDC177	Q9NQR7	707 aa	Predicted RBP	18.85	■□□□□ 0.61
PTPA-223	ENST00000452489	SNX15	Q9NRS6	342 aa		18.85	■□□□□ 0.61
PTPA-223	ENST00000452489	CCM2L	Q9NUG4	571 aa	Predicted RBP	18.85	■□□□□ 0.61
PTPA-223	ENST00000452489	ADPRHL2	Q9NX46	363 aa		18.85	■□□□□ 0.61
PTPA-223	ENST00000452489	ARIH1	Q9Y4X5	557 aa	Predicted RBP	18.85	■□□□□ 0.61
PTPA-223	ENST00000452489	PMF1-BGLAP	U3KQ54	211 aa		18.85	■□□□□ 0.61
PTPA-223	ENST00000452489	TBKBP1	A7MCY6	615 aa		18.84	■□□□□ 0.61
PTPA-223	ENST00000452489	TMEM233	B4DJY2	109 aa		18.84	■□□□□ 0.61
PTPA-223	ENST00000452489	ABCB7	O75027	752 aa		18.84	■□□□□ 0.61
PTPA-223	ENST00000452489	METTL18	O95568	372 aa		18.84	■□□□□ 0.61
PTPA-223	ENST00000452489	KRT8	P05787	483 aa		18.84	■□□□□ 0.61
PTPA-223	ENST00000452489	CLCNKB	P51801	687 aa		18.84	■□□□□ 0.61
PTPA-223	ENST00000452489	ACAP2	Q15057	778 aa		18.84	■□□□□ 0.61
PTPA-223	ENST00000452489	GEN1	Q17RS7	908 aa		18.84	■□□□□ 0.61
PTPA-223	ENST00000452489	ANO4	Q32M45	955 aa		18.84	■□□□□ 0.61
PTPA-223	ENST00000452489	USP51	Q70EK9	711 aa		18.84	■□□□□ 0.61
PTPA-223	ENST00000452489	LINC00523	Q86TU6	105 aa		18.84	■□□□□ 0.61
PTPA-223	ENST00000452489	DDIAS	Q8IXT1	998 aa		18.84	■□□□□ 0.61
PTPA-223	ENST00000452489	HACE1	Q8IYU2	909 aa		18.84	■□□□□ 0.61
PTPA-223	ENST00000452489	SHCBP1	Q8NEM2	672 aa		18.84	■□□□□ 0.61
PTPA-223	ENST00000452489	HMGCLL1	Q8TB92	370 aa		18.84	■□□□□ 0.61
PTPA-223	ENST00000452489	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	18.84	■□□□□ 0.61
PTPA-223	ENST00000452489	MUS81	Q96NY9	551 aa		18.84	■□□□□ 0.61
PTPA-223	ENST00000452489	DHRS9	Q9BPW9	319 aa		18.84	■□□□□ 0.61
PTPA-223	ENST00000452489	RAP2C	Q9Y3L5	183 aa		18.84	■□□□□ 0.61
PTPA-223	ENST00000452489	AXL	P30530	894 aa		18.84	■□□□□ 0.61
PTPA-223	ENST00000452489	OXTR	P30559	389 aa		18.84	■□□□□ 0.61
PTPA-223	ENST00000452489	LSM3	P62310	102 aa	Known RBP	18.84	■□□□□ 0.61
PTPA-223	ENST00000452489	LAMC2	Q13753	1193 aa		18.84	■□□□□ 0.61
PTPA-223	ENST00000452489	FKBP9P1	Q75LS8	142 aa		18.84	■□□□□ 0.61
PTPA-223	ENST00000452489	SPPL2C	Q8IUH8	684 aa		18.84	■□□□□ 0.61
PTPA-223	ENST00000452489	SP140L	Q9H930	580 aa		18.84	■□□□□ 0.61
PTPA-223	ENST00000452489	VWA7	Q9Y334	891 aa		18.84	■□□□□ 0.61
PTPA-223	ENST00000452489	PTPRJ	Q12913	1337 aa		18.84	■□□□□ 0.61
PTPA-223	ENST00000452489	LRRIQ4	A6NIV6	560 aa		18.83	■□□□□ 0.61
PTPA-223	ENST00000452489	TOMM70	O94826	608 aa		18.83	■□□□□ 0.61
PTPA-223	ENST00000452489	VNN1	O95497	513 aa		18.83	■□□□□ 0.61
PTPA-223	ENST00000452489	SHMT2	P34897	504 aa		18.83	■□□□□ 0.61
PTPA-223	ENST00000452489	CRKL	P46109	303 aa	Known RBP	18.83	■□□□□ 0.61
PTPA-223	ENST00000452489	SLC7A2	P52569	658 aa		18.83	■□□□□ 0.61
PTPA-223	ENST00000452489	PDK2	Q15119	407 aa		18.83	■□□□□ 0.61
PTPA-223	ENST00000452489	SPRED1	Q7Z699	444 aa		18.83	■□□□□ 0.61
PTPA-223	ENST00000452489	SPART	Q8N0X7	666 aa		18.83	■□□□□ 0.61
PTPA-223	ENST00000452489	YTHDF1	Q9BYJ9	559 aa	Known RBP	18.83	■□□□□ 0.61
PTPA-223	ENST00000452489	C2orf40	Q9H1Z8	148 aa		18.83	■□□□□ 0.61
PTPA-223	ENST00000452489	ADNP	Q9H2P0	1102 aa		18.83	■□□□□ 0.61
PTPA-223	ENST00000452489	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	18.83	■□□□□ 0.61
PTPA-223	ENST00000452489	GIMAP4	Q9NUV9	329 aa		18.83	■□□□□ 0.61
PTPA-223	ENST00000452489	GGA1	Q9UJY5	639 aa		18.83	■□□□□ 0.61
PTPA-223	ENST00000452489	EIF3L	Q9Y262	564 aa	Known RBP	18.83	■□□□□ 0.61
PTPA-223	ENST00000452489	SPEF1	Q9Y4P9	236 aa		18.83	■□□□□ 0.61
PTPA-223	ENST00000452489	PTPRF	P10586	1907 aa		18.83	■□□□□ 0.61
PTPA-223	ENST00000452489	VWA5A	O00534	786 aa		18.83	■□□□□ 0.6
PTPA-223	ENST00000452489	TNNI1	P19237	187 aa		18.83	■□□□□ 0.6
PTPA-223	ENST00000452489	ILF2	Q12905	390 aa	Known RBP	18.83	■□□□□ 0.6
PTPA-223	ENST00000452489	ARHGEF6	Q15052	776 aa		18.83	■□□□□ 0.6
PTPA-223	ENST00000452489	NPTX1	Q15818	432 aa		18.83	■□□□□ 0.6
PTPA-223	ENST00000452489	ZIK1	Q3SY52	487 aa	Predicted RBP	18.83	■□□□□ 0.6
PTPA-223	ENST00000452489	AASDH	Q4L235	1098 aa	Predicted RBP	18.83	■□□□□ 0.6
PTPA-223	ENST00000452489	DESI1	Q6ICB0	168 aa		18.83	■□□□□ 0.6
PTPA-223	ENST00000452489	LYSMD2	Q8IV50	215 aa		18.83	■□□□□ 0.6
PTPA-223	ENST00000452489	WDTC1	Q8N5D0	677 aa		18.83	■□□□□ 0.6
PTPA-223	ENST00000452489	POC5	Q8NA72	575 aa		18.83	■□□□□ 0.6
PTPA-223	ENST00000452489	OR6Q1	Q8NGQ2	317 aa		18.83	■□□□□ 0.6
PTPA-223	ENST00000452489	ATL1	Q8WXF7	558 aa		18.83	■□□□□ 0.6
PTPA-223	ENST00000452489	DHX35	Q9H5Z1	703 aa	Known RBP	18.83	■□□□□ 0.6
PTPA-223	ENST00000452489	RSAD1	Q9HA92	442 aa		18.83	■□□□□ 0.6
PTPA-223	ENST00000452489	TRIM39	Q9HCM9	518 aa		18.83	■□□□□ 0.6
PTPA-223	ENST00000452489	FBXO8	Q9NRD0	319 aa		18.83	■□□□□ 0.6
PTPA-223	ENST00000452489	MAU2	Q9Y6X3	613 aa		18.83	■□□□□ 0.6
PTPA-223	ENST00000452489	DHRS12	A0PJE2	317 aa		18.82	■□□□□ 0.6
PTPA-223	ENST00000452489	ERVH48-1	M5A8F1	160 aa		18.82	■□□□□ 0.6
PTPA-223	ENST00000452489	RAD51B	O15315	384 aa		18.82	■□□□□ 0.6
PTPA-223	ENST00000452489	FAS	P25445	335 aa		18.82	■□□□□ 0.6
PTPA-223	ENST00000452489	ABCG1	P45844	678 aa		18.82	■□□□□ 0.6
PTPA-223	ENST00000452489	RPS9	P46781	194 aa	Known RBP	18.82	■□□□□ 0.6
PTPA-223	ENST00000452489	ALDH7A1	P49419	539 aa	Known RBP	18.82	■□□□□ 0.6
PTPA-223	ENST00000452489	RARRES1	P49788	294 aa		18.82	■□□□□ 0.6
PTPA-223	ENST00000452489	MRPS15	P82914	257 aa	Known RBP	18.82	■□□□□ 0.6
PTPA-223	ENST00000452489	SLC12A1	Q13621	1099 aa		18.82	■□□□□ 0.6
PTPA-223	ENST00000452489	TJAP1	Q5JTD0	557 aa		18.82	■□□□□ 0.6
PTPA-223	ENST00000452489	TWF2	Q6IBS0	349 aa	Known RBP	18.82	■□□□□ 0.6
PTPA-223	ENST00000452489	MAP6	Q96JE9	813 aa		18.82	■□□□□ 0.6
PTPA-223	ENST00000452489	STAU2	Q9NUL3	570 aa	Known RBP eCLIP	18.82	■□□□□ 0.6	2e-7	■■□□□ 14.3
PTPA-223	ENST00000452489	EGFL7	Q9UHF1	273 aa		18.82	■□□□□ 0.6
PTPA-223	ENST00000452489	SYCE1L	A8MT33	242 aa		18.82	■□□□□ 0.6
PTPA-223	ENST00000452489	MAN1A2	O60476	641 aa		18.82	■□□□□ 0.6
PTPA-223	ENST00000452489	HSPA1A	P0DMV8	641 aa	Known RBP	18.82	■□□□□ 0.6
PTPA-223	ENST00000452489	HSPA1B	P0DMV9	641 aa	Known RBP	18.82	■□□□□ 0.6
PTPA-223	ENST00000452489	IL7R	P16871	459 aa		18.82	■□□□□ 0.6
PTPA-223	ENST00000452489	GRIA4	P48058	902 aa		18.82	■□□□□ 0.6
PTPA-223	ENST00000452489	SNRPF	P62306	86 aa	Known RBP	18.82	■□□□□ 0.6
PTPA-223	ENST00000452489	FXN	Q16595	210 aa		18.82	■□□□□ 0.6
PTPA-223	ENST00000452489	OTOP3	Q7RTS5	596 aa		18.82	■□□□□ 0.6
PTPA-223	ENST00000452489	R3HCC1L	Q7Z5L2	792 aa	Known RBP	18.82	■□□□□ 0.6
PTPA-223	ENST00000452489	USP37	Q86T82	979 aa		18.82	■□□□□ 0.6
PTPA-223	ENST00000452489	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	18.82	■□□□□ 0.6

Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms