RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 RFFLQ8WZ73 363 aa7.9□□□□□ -1.14
CD44-211ENST00000442151 ARHGEF2Q92974 986 aaKnown RBP7.9□□□□□ -1.14
CD44-211ENST00000442151 ARRDC3Q96B67 414 aa7.9□□□□□ -1.14
CD44-211ENST00000442151 TRIM11Q96F44 468 aa7.9□□□□□ -1.14
CD44-211ENST00000442151 DEPDC7Q96QD5 511 aa7.9□□□□□ -1.14
CD44-211ENST00000442151 ERGIC2Q96RQ1 377 aa7.9□□□□□ -1.14
CD44-211ENST00000442151 C11orf70Q9BRQ4 267 aa7.9□□□□□ -1.14
CD44-211ENST00000442151 CNPY3Q9BT09 278 aa7.9□□□□□ -1.14
CD44-211ENST00000442151 CALN1Q9BXU9 219 aa7.9□□□□□ -1.14
CD44-211ENST00000442151 TNKS2Q9H2K2 1166 aa7.9□□□□□ -1.14
CD44-211ENST00000442151 ZDHHC6Q9H6R6 413 aa7.9□□□□□ -1.14
CD44-211ENST00000442151 PARVAQ9NVD7 372 aa7.9□□□□□ -1.14
CD44-211ENST00000442151 WDR70Q9NW82 654 aa7.9□□□□□ -1.14
CD44-211ENST00000442151 KCTD5Q9NXV2 234 aa7.9□□□□□ -1.14
CD44-211ENST00000442151 SPASTQ9UBP0 616 aa7.9□□□□□ -1.14
CD44-211ENST00000442151 SALL4Q9UJQ4 1053 aa7.9□□□□□ -1.14
CD44-211ENST00000442151 CLCA2Q9UQC9 943 aa7.9□□□□□ -1.14
CD44-211ENST00000442151 FADS3Q9Y5Q0 445 aa7.9□□□□□ -1.14
CD44-211ENST00000442151 USP24Q9UPU5 2620 aa7.9□□□□□ -1.15
CD44-211ENST00000442151 A0A1W2PQ67 120 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 CAPN8A6NHC0 703 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 ARHGAP42A6NI28 874 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 C16orf96A6NNT2 1141 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 WASH4PA8MWX3 477 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 TMX2-CTNND1H3BSU7 103 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 KRIT1O00522 736 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 SCAMP1O15126 338 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 DAPK3O43293 454 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 ZMPSTE24O75844 475 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 TM7SF2O76062 418 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 CAPNS1P04632 268 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 DGKAP23743 735 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 EPHB2P29323 1055 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 ZNF143P52747 638 aaPredicted RBP7.89□□□□□ -1.15
CD44-211ENST00000442151 NDST2P52849 883 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 THOP1P52888 689 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 TAS2R38P59533 333 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 POLR2LP62875 67 aaKnown RBP7.89□□□□□ -1.15
CD44-211ENST00000442151 RTP5Q14D33 572 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 SHBQ15464 509 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 POM121L1PQ3SYA9 428 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 PRAMEF14Q5SWL7 426 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 CCDC183Q5T5S1 534 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 OTUD1Q5VV17 481 aaPredicted RBP7.89□□□□□ -1.15
CD44-211ENST00000442151 ERAP2Q6P179 960 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 LAYNQ6UX15 382 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 RBM43Q6ZSC3 357 aaKnown RBP7.89□□□□□ -1.15
CD44-211ENST00000442151 TTC7BQ86TV6 843 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 SPATS2Q86XZ4 545 aaKnown RBP7.89□□□□□ -1.15
CD44-211ENST00000442151 PSTKQ8IV42 348 aaKnown RBP7.89□□□□□ -1.15
CD44-211ENST00000442151 OR52K2Q8NGK3 314 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 GRIN3AQ8TCU5 1115 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 C1QTNF2Q9BXJ5 285 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 CPEB1Q9BZB8 566 aaKnown RBP7.89□□□□□ -1.15
CD44-211ENST00000442151 EDEM3Q9BZQ6 932 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 TTYH3Q9C0H2 523 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 HAUS2Q9NVX0 235 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 DNAJC28Q9NX36 388 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 DKK3Q9UBP4 350 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 MFHAS1Q9Y4C4 1052 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 WASF2Q9Y6W5 498 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 CFAP69A5D8W1 941 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.89□□□□□ -1.15
CD44-211ENST00000442151 K7ERQ8 282 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 ZW10O43264 779 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 SMAD6O43541 496 aaKnown RBP7.89□□□□□ -1.15
CD44-211ENST00000442151 PIAS2O75928 621 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 PAK4O96013 591 aaPredicted RBP7.89□□□□□ -1.15
CD44-211ENST00000442151 MT-CO3P00414 261 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 CSF2P04141 144 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 CTSLP07711 333 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 CKMT1AP12532 417 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 CHRNB2P17787 502 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 PEX5P50542 639 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 RENBPP51606 427 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 IRAK1P51617 712 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 RHOAP61586 193 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 TARDBPQ13148 414 aaKnown RBP eCLIP7.89□□□□□ -1.15
CD44-211ENST00000442151 PEX6Q13608 980 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 RFTN1Q14699 578 aaPredicted RBP7.89□□□□□ -1.15
CD44-211ENST00000442151 ACAP1Q15027 740 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 TMEM259Q4ZIN3 620 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 HES3Q5TGS1 186 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 MANEALQ5VSG8 457 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 BROXQ5VW32 411 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 ZCCHC8Q6NZY4 707 aaKnown RBP7.89□□□□□ -1.15
CD44-211ENST00000442151 WDR59Q6PJI9 974 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 PTAR1Q7Z6K3 402 aaPredicted RBP7.89□□□□□ -1.15
CD44-211ENST00000442151 PARGQ86W56 976 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 DNAAF5Q86Y56 855 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 BBS5Q8N3I7 341 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 LZTR1Q8N653 840 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 EMC1Q8N766 993 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 RTL3Q8N8U3 475 aaKnown RBP7.89□□□□□ -1.15
CD44-211ENST00000442151 CHST14Q8NCH0 376 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 OR6C4Q8NGE1 309 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 SLC30A5Q8TAD4 765 aa7.89□□□□□ -1.15
CD44-211ENST00000442151 CCDC97Q96F63 343 aaPredicted RBP7.89□□□□□ -1.15
CD44-211ENST00000442151 ZNF641Q96N77 438 aaPredicted RBP7.89□□□□□ -1.15
CD44-211ENST00000442151 IL12RB2Q99665 862 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms