RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-206	ENST00000441089	CNOT6	Q9ULM6	557 aa	Known RBP	4.98	□□□□□ -1.61
PTPN4-206	ENST00000441089	MYO6	Q9UM54	1294 aa		4.98	□□□□□ -1.61
PTPN4-206	ENST00000441089	CNTN6	Q9UQ52	1028 aa		4.98	□□□□□ -1.61
PTPN4-206	ENST00000441089	BTBD3	Q9Y2F9	522 aa		4.98	□□□□□ -1.61
PTPN4-206	ENST00000441089	DAAM1	Q9Y4D1	1078 aa		4.98	□□□□□ -1.61
PTPN4-206	ENST00000441089	CORIN	Q9Y5Q5	1042 aa		4.98	□□□□□ -1.61
PTPN4-206	ENST00000441089	ATR	Q13535	2644 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	FN1	P02751	2386 aa	Known RBP	4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089		A0A087X0T9	212 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	SSU72P8	A0A1W2PR75	194 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	FAM170A	A1A519	330 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	KPNA7	A9QM74	516 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	BCAT2	O15382	392 aa	Predicted RBP	4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	XPOT	O43592	962 aa	Known RBP	4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	DFNA5	O60443	496 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	NFATC1	O95644	943 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	SERPING1	P05155	500 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	MME	P08473	750 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	FAM228B	P0C875	321 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	CYP11B1	P15538	503 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	FER	P16591	822 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	CD58	P19256	250 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	PI3	P19957	117 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	TBXAS1	P24557	533 aa	Predicted RBP	4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	USP8	P40818	1118 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	BRCC3	P46736	316 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	AARS	P49588	968 aa	Known RBP eCLIP	4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	TAF6	P49848	677 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	CCT8	P50990	548 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	LILRA4	P59901	499 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	CYP4F8	P98187	520 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	FMO1	Q01740	532 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	TAGLN	Q01995	201 aa	Known RBP	4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	KLHL30	Q0D2K2	578 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	INCA1	Q0VD86	236 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	DUSP4	Q13115	394 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	ILK	Q13418	452 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	MPP2	Q14168	576 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	TAF12	Q16514	161 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	CCDC142	Q17RM4	750 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	SOWAHA	Q2M3V2	549 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	VMAC	Q2NL98	169 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	ZNF394	Q53GI3	561 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	KIAA1614	Q5VZ46	1190 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	FBXL19	Q6PCT2	694 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	TMEM270	Q6UE05	265 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	CCDC81	Q6ZN84	652 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	ENOSF1	Q7L5Y1	443 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	SLC47A2	Q86VL8	602 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	TICAM1	Q8IUC6	712 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	TMTC1	Q8IUR5	882 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	ZCCHC9	Q8N567	271 aa	Known RBP	4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	EXD3	Q8N9H8	876 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	RBBP8NL	Q8NC74	664 aa	Predicted RBP	4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	FAM13C	Q8NE31	585 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	CCDC112	Q8NEF3	446 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	ZNF397	Q8NF99	534 aa	Predicted RBP	4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	SLC30A5	Q8TAD4	765 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	OSCP1	Q8WVF1	389 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	TFAP2B	Q92481	460 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	USP13	Q92995	863 aa	Predicted RBP	4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	JAKMIP2	Q96AA8	810 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	TRIM44	Q96DX7	344 aa	Predicted RBP	4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	FAXDC2	Q96IV6	333 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	ZNF560	Q96MR9	790 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	PCDHB18P	Q96TA0	734 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	TRIT1	Q9H3H1	467 aa	Known RBP	4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	DPEP3	Q9H4B8	488 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	CISH	Q9NSE2	258 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	SLC38A7	Q9NVC3	462 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	GDAP2	Q9NXN4	497 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	TAS2R14	Q9NYV8	317 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	CALCOCO1	Q9P1Z2	691 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	HSFX1	Q9UBD0	423 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	L1RE1	Q9UN81	338 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	TFR2	Q9UP52	801 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	CCL26	Q9Y258	94 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	PCDHB4	Q9Y5E5	795 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	SNX9	Q9Y5X1	595 aa		4.97	□□□□□ -1.61
PTPN4-206	ENST00000441089	DIDO1	Q9BTC0	2240 aa	Known RBP	4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	E2F8	A0AVK6	867 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	EIF3CL	B5ME19	914 aa	Known RBP	4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	CYB561D2	O14569	222 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	SEMA7A	O75326	666 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	PPFIA2	O75334	1257 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	NDUFA10	O95299	355 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	LCA5L	O95447	670 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	APOD	P05090	189 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	KRT5	P13647	590 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	GABRG2	P18507	467 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	LMO2	P25791	158 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	RPL9	P32969	192 aa	Known RBP	4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	OPRD1	P41143	372 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	EIF2D	P41214	584 aa	Known RBP	4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	PNPLA4	P41247	253 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	ARHGAP25	P42331	645 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	TNFRSF4	P43489	277 aa		4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	TUFM	P49411	452 aa	Known RBP	4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	AFF3	P51826	1226 aa	Known RBP	4.96	□□□□□ -1.62
PTPN4-206	ENST00000441089	KIF11	P52732	1056 aa		4.96	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 41 ms