RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 CLNKQ7Z7G1 428 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 CPNE5Q9HCH3 593 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 ENTPD4Q9Y227 616 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 GRAP2O75791 330 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 SOAT1P35610 550 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 MNDAP41218 407 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 PTSQ03393 145 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 TMEM132BQ14DG7 1078 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 DCUN1D5Q9BTE7 237 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 TMEM168Q9H0V1 697 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 ABCA6Q8N139 1617 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 ADGRB3O60242 1522 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 ATP9BO43861 1147 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 ATP6V1G1O75348 118 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 PROCP04070 461 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 SMARCB1Q12824 385 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 KCNMB4Q86W47 210 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 IRGQQ8WZA9 623 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 ARL15Q9NXU5 204 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 TESMINQ9Y4I5 508 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 A0A1B0GVC2 190 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 ENTPD3O75355 529 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 PRG2P13727 222 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 MCAMP43121 646 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 ECT2LQ008S8 904 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 FMR1Q06787 632 aaKnown RBP eCLIP7.24□□□□□ -1.254e-8■■■■■ 46.3
VPS53-204ENST00000437048 ARMC6Q6NXE6 501 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 FRMD7Q6ZUT3 714 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 FAM71DQ8N9W8 422 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 BHLHE22Q8NFJ8 381 aaPredicted RBP7.24□□□□□ -1.25
VPS53-204ENST00000437048 ASB7Q9H672 318 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 EBF2Q9HAK2 575 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 MRTO4Q9UKD2 239 aaKnown RBP7.24□□□□□ -1.25
VPS53-204ENST00000437048 BCS1LQ9Y276 419 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 PPEF2O14830 753 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 HBP1O60381 514 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 C6orf222P0C671 652 aaPredicted RBP7.24□□□□□ -1.25
VPS53-204ENST00000437048 RAB27AP51159 221 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 TXNL4AP83876 142 aaKnown RBP7.24□□□□□ -1.25
VPS53-204ENST00000437048 SLCO6A1Q86UG4 719 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 SIRT2Q8IXJ6 389 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 RASSF1Q9NS23 344 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 USP17L5A8MUK1 530 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 CLPXO76031 633 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 OR6B1O95007 311 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 GJB6O95452 261 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 CD2P06729 351 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 CHRM3P20309 590 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 NTSP30990 170 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 RAB5BP61020 215 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 TTMPQ5BVD1 217 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 ZNF540Q8NDQ6 660 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 LPCAT1Q8NF37 534 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 ANKRD49Q8WVL7 239 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 TAMM41Q96BW9 452 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 NXF3Q9H4D5 531 aaKnown RBP7.24□□□□□ -1.25
VPS53-204ENST00000437048 S100A14Q9HCY8 104 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 LIMD1Q9UGP4 676 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 NUP50Q9UKX7 468 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 MAB21L2Q9Y586 359 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 SH3D21A4FU49 640 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 KLF11O14901 512 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 AMPD1P23109 780 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 YWHAQP27348 245 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 TMBIM6P55061 237 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 CBLBQ13191 982 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 ZNHIT3Q15649 155 aaPredicted RBP7.24□□□□□ -1.25
VPS53-204ENST00000437048 RETSATQ6NUM9 610 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 BORAQ6PGQ7 559 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 SPOCD1Q6ZMY3 1216 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 OFCC1Q8IZS5 231 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 ABRAQ8N0Z2 381 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 TNFAIP8L1Q8WVP5 186 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 HPDLQ96IR7 371 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 SLC9A7Q96T83 725 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 FAM126AQ9BYI3 521 aaPredicted RBP7.24□□□□□ -1.25
VPS53-204ENST00000437048 SARS2Q9NP81 518 aaKnown RBP7.24□□□□□ -1.25
VPS53-204ENST00000437048 CALML5Q9NZT1 146 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 LRRC42Q9Y546 428 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 GSC2O15499 205 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 DARSP14868 501 aaKnown RBP7.24□□□□□ -1.25
VPS53-204ENST00000437048 PI16Q6UXB8 463 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 SCARA5Q6ZMJ2 495 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 TEX47Q8TBZ9 253 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 CGRRF1Q99675 332 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 VRK1Q99986 396 aaPredicted RBP7.24□□□□□ -1.25
VPS53-204ENST00000437048 MYNNQ9NPC7 610 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 CLCA2Q9UQC9 943 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 H3BNH8 94 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 PAPSS1O43252 624 aaPredicted RBP7.24□□□□□ -1.25
VPS53-204ENST00000437048 GSTM1P09488 218 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 FOSL1P15407 271 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 AXLP30530 894 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 ACOX1Q15067 660 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 CLYBLQ8N0X4 340 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 PPP1R16AQ96I34 528 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 YME1L1Q96TA2 773 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 GREM2Q9H772 168 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 A0A096LPK6 155 aa7.24□□□□□ -1.25
VPS53-204ENST00000437048 TRAPPC13A5PLN9 417 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms