RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 SEPT6Q14141 434 aa21.37■■□□□ 1.01
PTPRF-207ENST00000436724 SHHQ15465 462 aa21.37■■□□□ 1.01
PTPRF-207ENST00000436724 TEAD2Q15562 447 aa21.37■■□□□ 1.01
PTPRF-207ENST00000436724 ESRP1Q6NXG1 681 aaKnown RBP21.37■■□□□ 1.01
PTPRF-207ENST00000436724 LVRNQ6Q4G3 990 aa21.37■■□□□ 1.01
PTPRF-207ENST00000436724 CDHR3Q6ZTQ4 885 aa21.37■■□□□ 1.01
PTPRF-207ENST00000436724 TPGS1Q6ZTW0 290 aa21.37■■□□□ 1.01
PTPRF-207ENST00000436724 HTR3DQ70Z44 454 aa21.37■■□□□ 1.01
PTPRF-207ENST00000436724 SUGP1Q8IWZ8 645 aaKnown RBP21.37■■□□□ 1.01
PTPRF-207ENST00000436724 RIN3Q8TB24 985 aa21.37■■□□□ 1.01
PTPRF-207ENST00000436724 ATXN7L3BQ96GX2 97 aa21.37■■□□□ 1.01
PTPRF-207ENST00000436724 MOSPD3O75425 235 aa21.36■■□□□ 1.01
PTPRF-207ENST00000436724 RHOP08100 348 aa21.36■■□□□ 1.01
PTPRF-207ENST00000436724 ADRA1DP25100 572 aa21.36■■□□□ 1.01
PTPRF-207ENST00000436724 FOXN2P32314 431 aa21.36■■□□□ 1.01
PTPRF-207ENST00000436724 ABCG1P45844 678 aa21.36■■□□□ 1.01
PTPRF-207ENST00000436724 TEDDM1Q5T9Z0 273 aa21.36■■□□□ 1.01
PTPRF-207ENST00000436724 FAM217AQ8IXS0 508 aa21.36■■□□□ 1.01
PTPRF-207ENST00000436724 TDRD5Q8NAT2 981 aaKnown RBP21.36■■□□□ 1.01
PTPRF-207ENST00000436724 DDI1Q8WTU0 396 aa21.36■■□□□ 1.01
PTPRF-207ENST00000436724 CINPQ9BW66 212 aaPredicted RBP21.36■■□□□ 1.01
PTPRF-207ENST00000436724 KDM4CQ9H3R0 1056 aa21.36■■□□□ 1.01
PTPRF-207ENST00000436724 ARNT2Q9HBZ2 717 aa21.36■■□□□ 1.01
PTPRF-207ENST00000436724 CLEC4EQ9ULY5 219 aa21.36■■□□□ 1.01
PTPRF-207ENST00000436724 TCAF1Q9Y4C2 921 aa21.36■■□□□ 1.01
PTPRF-207ENST00000436724 LUC7L3O95232 432 aaKnown RBP21.36■■□□□ 1.01
PTPRF-207ENST00000436724 SERPINB9P50453 376 aa21.36■■□□□ 1.01
PTPRF-207ENST00000436724 CDH18Q13634 790 aa21.36■■□□□ 1.01
PTPRF-207ENST00000436724 POTEHQ6S545 545 aa21.36■■□□□ 1.01
PTPRF-207ENST00000436724 PPHLN1Q8NEY8 458 aaKnown RBP21.36■■□□□ 1.01
PTPRF-207ENST00000436724 ALKBH8Q96BT7 664 aaKnown RBP21.36■■□□□ 1.01
PTPRF-207ENST00000436724 APOPT1Q96IL0 206 aa21.36■■□□□ 1.01
PTPRF-207ENST00000436724 PSKH2Q96QS6 385 aa21.36■■□□□ 1.01
PTPRF-207ENST00000436724 MGME1Q9BQP7 344 aa21.36■■□□□ 1.01
PTPRF-207ENST00000436724 SLC13A1Q9BZW2 595 aa21.36■■□□□ 1.01
PTPRF-207ENST00000436724 IARS2Q9NSE4 1012 aaKnown RBP21.36■■□□□ 1.01
PTPRF-207ENST00000436724 TXNDC16Q9P2K2 825 aa21.36■■□□□ 1.01
PTPRF-207ENST00000436724 NOTCH4Q99466 2003 aa21.35■■□□□ 1.01
PTPRF-207ENST00000436724 CCT8L1PA6NM43 557 aa21.35■■□□□ 1.01
PTPRF-207ENST00000436724 CD160O95971 181 aa21.35■■□□□ 1.01
PTPRF-207ENST00000436724 TOP3BO95985 862 aaKnown RBP21.35■■□□□ 1.01
PTPRF-207ENST00000436724 PTPN2P17706 415 aa21.35■■□□□ 1.01
PTPRF-207ENST00000436724 SIRPB2Q5JXA9 342 aa21.35■■□□□ 1.01
PTPRF-207ENST00000436724 SPOCK2Q92563 424 aa21.35■■□□□ 1.01
PTPRF-207ENST00000436724 TGS1Q96RS0 853 aaKnown RBP21.35■■□□□ 1.01
PTPRF-207ENST00000436724 ELAC2Q9BQ52 826 aaKnown RBP21.35■■□□□ 1.01
PTPRF-207ENST00000436724 FEM1AQ9BSK4 669 aa21.35■■□□□ 1.01
PTPRF-207ENST00000436724 NOD2Q9HC29 1040 aa21.35■■□□□ 1.01
PTPRF-207ENST00000436724 SEPT3Q9UH03 358 aa21.35■■□□□ 1.01
PTPRF-207ENST00000436724 VPS28Q9UK41 221 aa21.35■■□□□ 1.01
PTPRF-207ENST00000436724 SZT2Q5T011 3432 aa21.35■■□□□ 1.01
PTPRF-207ENST00000436724 TYW5A2RUC4 315 aaKnown RBP21.34■■□□□ 1.01
PTPRF-207ENST00000436724 RASSF9O75901 435 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 ZWINTO95229 277 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 ALDOAP04075 364 aaKnown RBP21.34■■□□□ 1.01
PTPRF-207ENST00000436724 ITGA2BP08514 1039 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 ATXN1LP0C7T5 689 aaKnown RBP21.34■■□□□ 1.01
PTPRF-207ENST00000436724 PBX2P40425 430 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 CSKP41240 450 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 SCTRP47872 440 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 SERPINH1P50454 418 aaKnown RBP21.34■■□□□ 1.01
PTPRF-207ENST00000436724 SCNN1BP51168 640 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 EPHA5P54756 1037 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 IL9RQ01113 521 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 MSLNQ13421 630 aaPredicted RBP21.34■■□□□ 1.01
PTPRF-207ENST00000436724 CYTH1Q15438 398 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 CNGA3Q16281 694 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 STRA8Q7Z7C7 330 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 CMTM8Q8IZV2 173 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 SH3RF2Q8TEC5 729 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 MTBPQ96DY7 904 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 PCMTD2Q9NV79 361 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 LOC285095A0A1B0GVY8 99 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 VAPBO95292 243 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 PRKCGP05129 697 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 RB1P06400 928 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 ARNTP27540 789 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 AVPR1AP37288 418 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 GP5P40197 560 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 NEK3P51956 506 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 NAB1Q13506 487 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 GALNT3Q14435 633 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 ITIH4Q14624 930 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 ZKSCAN8Q15776 578 aaPredicted RBP21.34■■□□□ 1.01
PTPRF-207ENST00000436724 HHATQ5VTY9 493 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 ADGRD2Q7Z7M1 963 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 MFN1Q8IWA4 741 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 MAGEB18Q96M61 343 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 FAM111AQ96PZ2 611 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 CPNE1Q99829 537 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 YBX2Q9Y2T7 364 aaKnown RBP21.34■■□□□ 1.01
PTPRF-207ENST00000436724 OR51B4Q9Y5P0 310 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 HCFC2Q9Y5Z7 792 aa21.34■■□□□ 1.01
PTPRF-207ENST00000436724 WDR91A4D1P6 747 aa21.33■■□□□ 1.01
PTPRF-207ENST00000436724 COPEO14579 308 aa21.33■■□□□ 1.01
PTPRF-207ENST00000436724 GPM6BQ13491 265 aa21.33■■□□□ 1.01
PTPRF-207ENST00000436724 FRG1Q14331 258 aaKnown RBP21.33■■□□□ 1.01
PTPRF-207ENST00000436724 ALG1LQ6GMV1 187 aa21.33■■□□□ 1.01
PTPRF-207ENST00000436724 GRASPQ7Z6J2 395 aaPredicted RBP21.33■■□□□ 1.01
PTPRF-207ENST00000436724 CCDC117Q8IWD4 279 aaPredicted RBP21.33■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms