RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 C6orf89Q6UWU4 347 aa13.63□□□□□ -0.23
LIMS1-204ENST00000409441 ARHGEF18Q6ZSZ5 1173 aa13.63□□□□□ -0.23
LIMS1-204ENST00000409441 BZW1Q7L1Q6 419 aaKnown RBP13.63□□□□□ -0.23
LIMS1-204ENST00000409441 CCDC13Q8IYE1 715 aa13.63□□□□□ -0.23
LIMS1-204ENST00000409441 SIX5Q8N196 739 aa13.63□□□□□ -0.23
LIMS1-204ENST00000409441 WFIKKN2Q8TEU8 576 aa13.63□□□□□ -0.23
LIMS1-204ENST00000409441 TTC17Q96AE7 1141 aa13.63□□□□□ -0.23
LIMS1-204ENST00000409441 SEC16BQ96JE7 1060 aa13.63□□□□□ -0.23
LIMS1-204ENST00000409441 USP29Q9HBJ7 922 aa13.63□□□□□ -0.23
LIMS1-204ENST00000409441 ELOVL2Q9NXB9 296 aa13.63□□□□□ -0.23
LIMS1-204ENST00000409441 RAD54BQ9Y620 910 aa13.63□□□□□ -0.23
LIMS1-204ENST00000409441 K7EQS6 105 aa13.62□□□□□ -0.23
LIMS1-204ENST00000409441 NCAM2O15394 837 aa13.62□□□□□ -0.23
LIMS1-204ENST00000409441 KDELR3O43731 214 aa13.62□□□□□ -0.23
LIMS1-204ENST00000409441 SNAP91O60641 907 aa13.62□□□□□ -0.23
LIMS1-204ENST00000409441 SPAG6O75602 509 aa13.62□□□□□ -0.23
LIMS1-204ENST00000409441 TMEM63AO94886 807 aa13.62□□□□□ -0.23
LIMS1-204ENST00000409441 MX2P20592 715 aa13.62□□□□□ -0.23
LIMS1-204ENST00000409441 DRD1P21728 446 aa13.62□□□□□ -0.23
LIMS1-204ENST00000409441 GLDCP23378 1020 aa13.62□□□□□ -0.23
LIMS1-204ENST00000409441 GCAP28676 217 aa13.62□□□□□ -0.23
LIMS1-204ENST00000409441 MAGEA6P43360 314 aa13.62□□□□□ -0.23
LIMS1-204ENST00000409441 TNFRSF4P43489 277 aa13.62□□□□□ -0.23
LIMS1-204ENST00000409441 STARD6P59095 220 aa13.62□□□□□ -0.23
LIMS1-204ENST00000409441 BASP1P80723 227 aaKnown RBP13.62□□□□□ -0.23
LIMS1-204ENST00000409441 GALNT2Q10471 571 aa13.62□□□□□ -0.23
LIMS1-204ENST00000409441 KCNJ11Q14654 390 aa13.62□□□□□ -0.23
LIMS1-204ENST00000409441 TMED2Q15363 201 aa13.62□□□□□ -0.23
LIMS1-204ENST00000409441 KLHL38Q2WGJ6 581 aa13.62□□□□□ -0.23
LIMS1-204ENST00000409441 FSTL4Q6MZW2 842 aa13.62□□□□□ -0.23
LIMS1-204ENST00000409441 ARHGAP36Q6ZRI8 547 aa13.62□□□□□ -0.23
LIMS1-204ENST00000409441 TRABD2AQ86V40 505 aa13.62□□□□□ -0.23
LIMS1-204ENST00000409441 ZC3H18Q86VM9 953 aaKnown RBP13.62□□□□□ -0.23
LIMS1-204ENST00000409441 LRRC49Q8IUZ0 686 aa13.62□□□□□ -0.23
LIMS1-204ENST00000409441 CYP4X1Q8N118 509 aa13.62□□□□□ -0.23
LIMS1-204ENST00000409441 DYDC1Q8WWB3 177 aa13.62□□□□□ -0.23
LIMS1-204ENST00000409441 SORCS1Q8WY21 1168 aa13.62□□□□□ -0.23
LIMS1-204ENST00000409441 EDAQ92838 391 aa13.62□□□□□ -0.23
LIMS1-204ENST00000409441 ACDQ96AP0 544 aa13.62□□□□□ -0.23
LIMS1-204ENST00000409441 C2orf49Q9BVC5 232 aaPredicted RBP13.62□□□□□ -0.23
LIMS1-204ENST00000409441 CIPCQ9C0C6 399 aa13.62□□□□□ -0.23
LIMS1-204ENST00000409441 C10orf88Q9H8K7 445 aa13.62□□□□□ -0.23
LIMS1-204ENST00000409441 NKIRAS1Q9NYS0 192 aa13.62□□□□□ -0.23
LIMS1-204ENST00000409441 PSMC3IPQ9P2W1 217 aaPredicted RBP13.62□□□□□ -0.23
LIMS1-204ENST00000409441 IPO11Q9UI26 975 aaKnown RBP13.62□□□□□ -0.23
LIMS1-204ENST00000409441 F5P12259 2224 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 J3KR12 359 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 KCNN4O15554 427 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 DCXO43602 365 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 ZNF189O75820 626 aaPredicted RBP13.61□□□□□ -0.23
LIMS1-204ENST00000409441 ZMPSTE24O75844 475 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 EGFP01133 1207 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 ATP5BP06576 529 aaKnown RBP13.61□□□□□ -0.23
LIMS1-204ENST00000409441 GARSP41250 739 aaKnown RBP13.61□□□□□ -0.23
LIMS1-204ENST00000409441 CTSOP43234 321 aaPredicted RBP13.61□□□□□ -0.23
LIMS1-204ENST00000409441 MAGEA9P43362 315 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 GEMIN4P57678 1058 aaKnown RBP13.61□□□□□ -0.23
LIMS1-204ENST00000409441 ECT2LQ008S8 904 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 SULT2A1Q06520 285 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 EIF4HQ15056 248 aaKnown RBP13.61□□□□□ -0.23
LIMS1-204ENST00000409441 PDK1Q15118 436 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 QPCTQ16769 361 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 FNBP1LQ5T0N5 605 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 DCAF4L2Q8NA75 395 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 CCNYQ8ND76 341 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 LRRN4Q8WUT4 740 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 CKAP2Q8WWK9 683 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 EZH1Q92800 747 aaPredicted RBP13.61□□□□□ -0.23
LIMS1-204ENST00000409441 SGSM3Q96HU1 749 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 OLFM3Q96PB7 478 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 KCNK9Q9NPC2 374 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 VPS51Q9UID3 782 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 RABGEF1Q9UJ41 708 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 NDRG2Q9UN36 371 aaKnown RBP13.61□□□□□ -0.23
LIMS1-204ENST00000409441 PLA2G4CQ9UP65 541 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 MRPS17Q9Y2R5 130 aaKnown RBP13.61□□□□□ -0.23
LIMS1-204ENST00000409441 STARD13Q9Y3M8 1113 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 KANSL1LA0AUZ9 987 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 ANTXRLA6NF34 631 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 HACD1B0YJ81 288 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 POC1B-GALNT4F8VUJ3 575 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 GOLGA8MH3BSY2 632 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 PRPF4O43172 522 aaKnown RBP eCLIP13.61□□□□□ -0.23
LIMS1-204ENST00000409441 MAFKO60675 156 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 DLDP09622 509 aaKnown RBP13.61□□□□□ -0.23
LIMS1-204ENST00000409441 GPX6P59796 221 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 ITIH4Q14624 930 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 SLC45A4Q5BKX6 768 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 RETSATQ6NUM9 610 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 LINGO4Q6UY18 593 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 PIGWQ7Z7B1 504 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 ANKMY2Q8IV38 441 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 SRRM1Q8IYB3 904 aaKnown RBP13.61□□□□□ -0.23
LIMS1-204ENST00000409441 ATPAF2Q8N5M1 289 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 OTUD6BQ8N6M0 293 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 CCDC197Q8NCU1 140 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 FBXO36Q8NEA4 188 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 CYB5D2Q8WUJ1 264 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 UCMAQ8WVF2 138 aa13.61□□□□□ -0.23
LIMS1-204ENST00000409441 CABS1Q96KC9 395 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms