RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 NTSR1P30989 418 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 CD70P32970 193 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 GJC1P36383 396 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 IL12RB1P42701 662 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 NR2C2P49116 596 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 RPL6Q02878 288 aaKnown RBP9.38□□□□□ -0.91
VPS53-203ENST00000401468 GNA12Q03113 381 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 ADCY2Q08462 1091 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 LMAN2Q12907 356 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 ENPP2Q13822 863 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 KRT81Q14533 505 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 EIF4HQ15056 248 aaKnown RBP9.38□□□□□ -0.91
VPS53-203ENST00000401468 PARP15Q460N3 678 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 PREPLQ4J6C6 727 aaPredicted RBP9.38□□□□□ -0.91
VPS53-203ENST00000401468 TRIM61Q5EBN2 209 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 TMEM215Q68D42 235 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 LRRC49Q8IUZ0 686 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 RASGEF1CQ8N431 466 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 KDM1BQ8NB78 822 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 WFIKKN2Q8TEU8 576 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 TTC17Q96AE7 1141 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 OLFM3Q96PB7 478 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 INSM2Q96T92 566 aaPredicted RBP9.38□□□□□ -0.91
VPS53-203ENST00000401468 PSMB7Q99436 277 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 FEM1AQ9BSK4 669 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 GTPBP2Q9BX10 602 aaKnown RBP9.38□□□□□ -0.91
VPS53-203ENST00000401468 CALN1Q9BXU9 219 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 CIPCQ9C0C6 399 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 VPS45Q9NRW7 570 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 KIAA1522Q9P206 1035 aaPredicted RBP9.38□□□□□ -0.91
VPS53-203ENST00000401468 STIM2Q9P246 746 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 GGA2Q9UJY4 613 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 SNX12Q9UMY4 172 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 STON1Q9Y6Q2 735 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 CEP295Q9C0D2 2601 aa9.38□□□□□ -0.91
VPS53-203ENST00000401468 CCDC163A0A0D9SF12 145 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 H0Y626 953 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 LRP3O75074 770 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 ZMPSTE24O75844 475 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 ALDH1A2O94788 518 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 PABPC1P11940 636 aaKnown RBP9.37□□□□□ -0.91
VPS53-203ENST00000401468 TGM2P21980 687 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 SERPINB6P35237 376 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 ETFBP38117 255 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 CTSOP43234 321 aaPredicted RBP9.37□□□□□ -0.91
VPS53-203ENST00000401468 NOVA1P51513 510 aaKnown RBP9.37□□□□□ -0.91
VPS53-203ENST00000401468 GNG11P61952 73 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 ZNF33AQ06730 810 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 GALNT2Q10471 571 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 SLC10A2Q12908 348 aaPredicted RBP9.37□□□□□ -0.91
VPS53-203ENST00000401468 SERINC3Q13530 473 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 CDH18Q13634 790 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 TFDP2Q14188 446 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 PLEKHG6Q3KR16 790 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 FUT11Q495W5 492 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 PITRM1Q5JRX3 1037 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 RWDD4Q6NW29 188 aaKnown RBP9.37□□□□□ -0.91
VPS53-203ENST00000401468 TMCO3Q6UWJ1 677 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 LPCAT2Q7L5N7 544 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 TFAP2DQ7Z6R9 452 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 SLC41A1Q8IVJ1 513 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 AHI1Q8N157 1196 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 CARNMT1Q8N4J0 409 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 DCAF4L2Q8NA75 395 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 DEFB124Q8NES8 71 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 ARHGEF2Q92974 986 aaKnown RBP9.37□□□□□ -0.91
VPS53-203ENST00000401468 PBKQ96KB5 322 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 HSPA12BQ96MM6 686 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 TSGA13Q96PP4 275 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 OSBPL9Q96SU4 736 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 NAPGQ99747 312 aaPredicted RBP9.37□□□□□ -0.91
VPS53-203ENST00000401468 OSBPL8Q9BZF1 889 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 ZNF395Q9H8N7 513 aaPredicted RBP9.37□□□□□ -0.91
VPS53-203ENST00000401468 PDFQ9HBH1 243 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 ABCB8Q9NUT2 735 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 DTLQ9NZJ0 730 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 MFHAS1Q9Y4C4 1052 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 SLCO1B1Q9Y6L6 691 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 IGF2RP11717 2491 aa9.37□□□□□ -0.91
VPS53-203ENST00000401468 TRPM6Q9BX84 2022 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 IGHV1OR15-9A0A0B4J2B8 117 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 A0A0D9SEW6 157 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 APOC4-APOC2K7ER74 178 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 KIF2AO00139 706 aaPredicted RBP9.36□□□□□ -0.91
VPS53-203ENST00000401468 CDX4O14627 284 aaPredicted RBP9.36□□□□□ -0.91
VPS53-203ENST00000401468 KCNK3O14649 394 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 ENC1O14682 589 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 APOL1O14791 398 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 KHNYNO15037 678 aaKnown RBP9.36□□□□□ -0.91
VPS53-203ENST00000401468 DAPK3O43293 454 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 TIMM44O43615 452 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 MFSD11O43934 449 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 ZNF500O60304 480 aaPredicted RBP9.36□□□□□ -0.91
VPS53-203ENST00000401468 CST8O60676 142 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 RAMP2O60895 175 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 TJP3O95049 919 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 CD160O95971 181 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 PEX11BO96011 259 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 APOC2P02655 101 aa9.36□□□□□ -0.91
VPS53-203ENST00000401468 ADRB1P08588 477 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms