RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 PPP3CAQ08209 521 aa5.51□□□□□ -1.53
VPS13C-204ENST00000395898 KLHL12Q53G59 568 aa5.51□□□□□ -1.53
VPS13C-204ENST00000395898 GDPD5Q8WTR4 605 aa5.51□□□□□ -1.53
VPS13C-204ENST00000395898 TTLL2Q9BWV7 592 aa5.51□□□□□ -1.53
VPS13C-204ENST00000395898 KLHL25Q9H0H3 589 aa5.51□□□□□ -1.53
VPS13C-204ENST00000395898 SMPD4Q9NXE4 827 aa5.51□□□□□ -1.53
VPS13C-204ENST00000395898 LOC102724159A0A0B4J2E5 919 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 SPTLC1O15269 473 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 PHGDHO43175 533 aaKnown RBP5.5□□□□□ -1.53
VPS13C-204ENST00000395898 LIASO43766 372 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 ULK1O75385 1050 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 UBA1P22314 1058 aaKnown RBP5.5□□□□□ -1.53
VPS13C-204ENST00000395898 CRATP43155 626 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 SQLEQ14534 574 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 PWP2Q15269 919 aaKnown RBP5.5□□□□□ -1.53
VPS13C-204ENST00000395898 RNF43Q68DV7 783 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 YTHDF3Q7Z739 585 aaKnown RBP5.5□□□□□ -1.53
VPS13C-204ENST00000395898 PEG10Q86TG7 708 aaKnown RBP5.5□□□□□ -1.53
VPS13C-204ENST00000395898 PHF13Q86YI8 300 aaPredicted RBP5.5□□□□□ -1.53
VPS13C-204ENST00000395898 RBFAQ8N0V3 343 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 KLHL1Q9NR64 748 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 BLOC1S4Q9NUP1 217 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 EFR3BQ9Y2G0 817 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 NDUFS2O75306 463 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 SERPINA6P08185 405 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 PTPRAP18433 802 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 LPOP22079 712 aaPredicted RBP5.5□□□□□ -1.53
VPS13C-204ENST00000395898 CASP7P55210 303 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 PDK4Q16654 411 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 MZT2AQ6P582 158 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 TPGS1Q6ZTW0 290 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 RD3Q7Z3Z2 195 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 IZUMO1Q8IYV9 350 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 MSL3Q8N5Y2 521 aaKnown RBP5.5□□□□□ -1.53
VPS13C-204ENST00000395898 ENKURQ8TC29 256 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 STK32AQ8WU08 396 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 CDCA5Q96FF9 252 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 C6orf62Q9GZU0 229 aaPredicted RBP5.5□□□□□ -1.53
VPS13C-204ENST00000395898 RNF208Q9H0X6 261 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 MRPL39Q9NYK5 338 aaKnown RBP5.5□□□□□ -1.53
VPS13C-204ENST00000395898 COL3A1P02461 1466 aaPredicted RBP5.5□□□□□ -1.53
VPS13C-204ENST00000395898 MST1RQ04912 1400 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 ITGAXP20702 1163 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 IL12RB1P42701 662 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 CSNK2BP67870 215 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 RGS1Q08116 209 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 FAAP100Q0VG06 881 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 UNC5AQ6ZN44 842 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 C3orf67Q6ZVT6 689 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 RTL3Q8N8U3 475 aaKnown RBP5.5□□□□□ -1.53
VPS13C-204ENST00000395898 PHF10Q8WUB8 498 aaKnown RBP5.5□□□□□ -1.53
VPS13C-204ENST00000395898 AKT1S1Q96B36 256 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 INTS7Q9NVH2 962 aaKnown RBP5.5□□□□□ -1.53
VPS13C-204ENST00000395898 KLQ9UEF7 1012 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 LEF1Q9UJU2 399 aaPredicted RBP5.5□□□□□ -1.53
VPS13C-204ENST00000395898 SPATA2Q9UM82 520 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 KCNE2Q9Y6J6 123 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 ZNF780BQ9Y6R6 833 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 GSTM5P46439 218 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 CLK2P49760 499 aaKnown RBP5.5□□□□□ -1.53
VPS13C-204ENST00000395898 IRF8Q02556 426 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.5□□□□□ -1.53
VPS13C-204ENST00000395898 FAM183BPQ6ZVS7 135 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 FAM20CQ8IXL6 584 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 WDR60Q8WVS4 1066 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 AP3S1Q92572 193 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 TRMOQ9BU70 441 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 FHDC1Q9C0D6 1143 aaPredicted RBP5.5□□□□□ -1.53
VPS13C-204ENST00000395898 MYLK2Q9H1R3 596 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 LHX5Q9H2C1 402 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 TRIT1Q9H3H1 467 aaKnown RBP5.5□□□□□ -1.53
VPS13C-204ENST00000395898 TRIM43BA6NCK2 446 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 GPR1P46091 355 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 GRIA4P48058 902 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 ATP12AP54707 1039 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 LSM12Q3MHD2 195 aaKnown RBP5.5□□□□□ -1.53
VPS13C-204ENST00000395898 HYIQ5T013 277 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 KLHL17Q6TDP4 642 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 ZCCHC7Q8N3Z6 543 aaKnown RBP5.5□□□□□ -1.53
VPS13C-204ENST00000395898 VGLL2Q8N8G2 317 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 ZNF248Q8NDW4 579 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 HELQQ8TDG4 1101 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 ZNF607Q96SK3 696 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 TRIM17Q9Y577 477 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 FAM208AQ9UK61 1670 aaKnown RBP5.5□□□□□ -1.53
VPS13C-204ENST00000395898 MROH1Q8NDA8 1641 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 PIGNO95427 931 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 GLRA2P23416 452 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 DLG4P78352 724 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 HSPA14Q0VDF9 509 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 WSCD1Q658N2 575 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 TMEM161BQ8NDZ6 487 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 NDOR1Q9UHB4 597 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 VPS4AQ9UN37 437 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 MEIS2O14770 477 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 ASNA1O43681 348 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 MT-CO1P00395 513 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 AMD1P17707 334 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 HTR7P34969 479 aa5.5□□□□□ -1.53
VPS13C-204ENST00000395898 POLD2P49005 469 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms