RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 C12orf50Q8NA57 414 aaPredicted RBP10.43□□□□□ -0.74
COL6A3-205ENST00000392004 SMARCD2Q92925 531 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 IRF7Q92985 503 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 NAF1Q96HR8 494 aaKnown RBP10.43□□□□□ -0.74
COL6A3-205ENST00000392004 ZNF570Q96NI8 536 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 ANKRD27Q96NW4 1050 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 CCDC134Q9H6E4 229 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 GABRDO14764 452 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 LIN7AO14910 233 aaPredicted RBP10.43□□□□□ -0.74
COL6A3-205ENST00000392004 NOMO1Q15155 1222 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 CCDC6Q16204 474 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 CCNG2Q16589 344 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 ARHGAP36Q6ZRI8 547 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 GAREM2Q75VX8 874 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 LZTR1Q8N653 840 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 OSBPL6Q9BZF3 934 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 RXFP1Q9HBX9 757 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 LRRC4CQ9HCJ2 640 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 ASCC3Q8N3C0 2202 aaKnown RBP10.43□□□□□ -0.74
COL6A3-205ENST00000392004 STC2O76061 302 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 S100BP04271 92 aaPredicted RBP10.42□□□□□ -0.74
COL6A3-205ENST00000392004 GLDCP23378 1020 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 SLC10A7Q0GE19 358 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 ERAP2Q6P179 960 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 TTC23LQ6PF05 361 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 SCD5Q86SK9 330 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 PEBP4Q96S96 227 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 HERC2P3Q9BVR0 1158 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 ZDHHC18Q9NUE0 388 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 AAR2Q9Y312 384 aaKnown RBP10.42□□□□□ -0.74
COL6A3-205ENST00000392004 PIAS3Q9Y6X2 628 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 KIAA1217Q5T5P2 1943 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 FGF10O15520 208 aaPredicted RBP10.42□□□□□ -0.74
COL6A3-205ENST00000392004 SMNDC1O75940 238 aaKnown RBP eCLIP10.42□□□□□ -0.74
COL6A3-205ENST00000392004 KRT37O76014 449 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 KITP10721 976 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 RPL22P35268 128 aaKnown RBP10.42□□□□□ -0.74
COL6A3-205ENST00000392004 MLLT6P55198 1093 aaPredicted RBP10.42□□□□□ -0.74
COL6A3-205ENST00000392004 BNIP1Q12981 228 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 BLMHQ13867 455 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 SLC45A4Q5BKX6 768 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 MS4A13Q5J8X5 152 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 RAET1GQ6H3X3 334 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 RHBDF2Q6PJF5 856 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 SLC30A9Q6PML9 568 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 DSG4Q86SJ6 1040 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 PPIL6Q8IXY8 311 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 PHACTR4Q8IZ21 702 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 IGSF8Q969P0 613 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 KLHL32Q96NJ5 620 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 VCXQ9H320 206 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 STK39Q9UEW8 545 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 ZNFX1Q9P2E3 1918 aaKnown RBP10.42□□□□□ -0.74
COL6A3-205ENST00000392004 A0A0U1RQS6 177 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 BHMG1C9JSJ3 638 aaPredicted RBP10.42□□□□□ -0.74
COL6A3-205ENST00000392004 RIPK2O43353 540 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 ATP5HO75947 161 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 PRAMEF12O95522 483 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 PSMC3P17980 439 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 ELK3P41970 407 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 WNT3AP56704 352 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 PDAP1Q13442 181 aaKnown RBP10.42□□□□□ -0.74
COL6A3-205ENST00000392004 LBRQ14739 615 aaKnown RBP10.42□□□□□ -0.74
COL6A3-205ENST00000392004 ACAP1Q15027 740 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 PON2Q15165 354 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 TANGO2Q6ICL3 276 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 SLC8B1Q6J4K2 584 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 TPRG1Q6ZUI0 275 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 FAM47EQ6ZV65 393 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 TRMT10CQ7L0Y3 403 aaKnown RBP10.42□□□□□ -0.74
COL6A3-205ENST00000392004 TRMT11Q7Z4G4 463 aaKnown RBP10.42□□□□□ -0.74
COL6A3-205ENST00000392004 TCEAL8Q8IYN2 117 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 IRGQQ8WZA9 623 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 MRPL38Q96DV4 380 aaKnown RBP10.42□□□□□ -0.74
COL6A3-205ENST00000392004 OXCT2Q9BYC2 517 aaPredicted RBP10.42□□□□□ -0.74
COL6A3-205ENST00000392004 VRTNQ9H8Y1 702 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 TLR6Q9Y2C9 796 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 HBS1LQ9Y450 684 aaKnown RBP10.42□□□□□ -0.74
COL6A3-205ENST00000392004 A8MUI8 341 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 PLK4O00444 970 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 SH3BGRLO75368 114 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 RHOBTB1O94844 696 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 SNUPNO95149 360 aaKnown RBP10.42□□□□□ -0.74
COL6A3-205ENST00000392004 BRAFP15056 766 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 RPL21P46778 160 aaKnown RBP10.42□□□□□ -0.74
COL6A3-205ENST00000392004 PDGFRLQ15198 375 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 SETMARQ53H47 684 aaPredicted RBP10.42□□□□□ -0.74
COL6A3-205ENST00000392004 C16orf46Q6P387 395 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 TRIM48Q8IWZ4 208 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 SHKBP1Q8TBC3 707 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 MLPHQ9BV36 600 aaPredicted RBP10.42□□□□□ -0.74
COL6A3-205ENST00000392004 TXLNGYQ9BZA5 131 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 ZBP1Q9H171 429 aa10.42□□□□□ -0.74
COL6A3-205ENST00000392004 H3BNC9 293 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 ARHGEF15O94989 841 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 GFAPP14136 432 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 RASSF2P50749 326 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 IL9RQ01113 521 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 CCDC15Q0P6D6 951 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 RPS6KA2Q15349 733 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms