RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 TRIB2Q92519 343 aa16.46■□□□□ 0.23
NKX3-1-201ENST00000380871 NT5C3BQ969T7 300 aa16.46■□□□□ 0.23
NKX3-1-201ENST00000380871 CNDP1Q96KN2 507 aa16.46■□□□□ 0.23
NKX3-1-201ENST00000380871 FAM124BQ9H5Z6 455 aaPredicted RBP16.46■□□□□ 0.23
NKX3-1-201ENST00000380871 ZNF385DQ9H6B1 395 aa16.46■□□□□ 0.23
NKX3-1-201ENST00000380871 SPC25Q9HBM1 224 aa16.46■□□□□ 0.23
NKX3-1-201ENST00000380871 ZFYVE28Q9HCC9 887 aa16.46■□□□□ 0.23
NKX3-1-201ENST00000380871 SFMBT1Q9UHJ3 866 aa16.46■□□□□ 0.23
NKX3-1-201ENST00000380871 TLK1Q9UKI8 766 aa16.46■□□□□ 0.23
NKX3-1-201ENST00000380871 ABT1Q9ULW3 272 aaKnown RBP16.46■□□□□ 0.23
NKX3-1-201ENST00000380871 PRPF19Q9UMS4 504 aaKnown RBP16.46■□□□□ 0.23
NKX3-1-201ENST00000380871 DENRO43583 198 aaKnown RBP16.46■□□□□ 0.22
NKX3-1-201ENST00000380871 DLX3O60479 287 aa16.46■□□□□ 0.22
NKX3-1-201ENST00000380871 RNASEH2AO75792 299 aaKnown RBP16.46■□□□□ 0.22
NKX3-1-201ENST00000380871 ARPP19P56211 112 aa16.46■□□□□ 0.22
NKX3-1-201ENST00000380871 MYLK3Q32MK0 819 aa16.46■□□□□ 0.22
NKX3-1-201ENST00000380871 KLHDC10Q6PID8 442 aa16.46■□□□□ 0.22
NKX3-1-201ENST00000380871 PCDHAC1Q9H158 963 aa16.46■□□□□ 0.22
NKX3-1-201ENST00000380871 GBA3Q9H227 469 aa16.46■□□□□ 0.22
NKX3-1-201ENST00000380871 TRMT13Q9NUP7 481 aaKnown RBP16.46■□□□□ 0.22
NKX3-1-201ENST00000380871 OR12D3Q9UGF7 316 aa16.46■□□□□ 0.22
NKX3-1-201ENST00000380871 TLL2Q9Y6L7 1015 aa16.46■□□□□ 0.22
NKX3-1-201ENST00000380871 TIMM44O43615 452 aa16.45■□□□□ 0.22
NKX3-1-201ENST00000380871 CSPG5O95196 566 aa16.45■□□□□ 0.22
NKX3-1-201ENST00000380871 AHSGP02765 367 aa16.45■□□□□ 0.22
NKX3-1-201ENST00000380871 SCNN1AP37088 669 aa16.45■□□□□ 0.22
NKX3-1-201ENST00000380871 POU6F1Q14863 301 aa16.45■□□□□ 0.22
NKX3-1-201ENST00000380871 TSTD2Q5T7W7 516 aa16.45■□□□□ 0.22
NKX3-1-201ENST00000380871 RP9Q8TA86 221 aaKnown RBP16.45■□□□□ 0.22
NKX3-1-201ENST00000380871 NXNL1Q96CM4 212 aa16.45■□□□□ 0.22
NKX3-1-201ENST00000380871 ZNF419Q96HQ0 510 aaPredicted RBP16.45■□□□□ 0.22
NKX3-1-201ENST00000380871 SERPINI1Q99574 410 aa16.45■□□□□ 0.22
NKX3-1-201ENST00000380871 WDR6Q9NNW5 1121 aaKnown RBP16.45■□□□□ 0.22
NKX3-1-201ENST00000380871 CDYLQ9Y232 598 aa16.45■□□□□ 0.22
NKX3-1-201ENST00000380871 AP1G1O43747 822 aa16.45■□□□□ 0.22
NKX3-1-201ENST00000380871 MT-CYBP00156 380 aaPredicted RBP16.45■□□□□ 0.22
NKX3-1-201ENST00000380871 HNRNPLP14866 589 aaKnown RBP eCLIP16.45■□□□□ 0.22
NKX3-1-201ENST00000380871 LRPAP1P30533 357 aa16.45■□□□□ 0.22
NKX3-1-201ENST00000380871 ART3Q13508 389 aa16.45■□□□□ 0.22
NKX3-1-201ENST00000380871 ANO4Q32M45 955 aa16.45■□□□□ 0.22
NKX3-1-201ENST00000380871 XKR4Q5GH76 650 aa16.45■□□□□ 0.22
NKX3-1-201ENST00000380871 ARHGAP36Q6ZRI8 547 aa16.45■□□□□ 0.22
NKX3-1-201ENST00000380871 BNIPLQ7Z465 357 aa16.45■□□□□ 0.22
NKX3-1-201ENST00000380871 TICAM1Q8IUC6 712 aa16.45■□□□□ 0.22
NKX3-1-201ENST00000380871 ZFP28Q8NHY6 868 aa16.45■□□□□ 0.22
NKX3-1-201ENST00000380871 GPR152Q8TDT2 470 aa16.45■□□□□ 0.22
NKX3-1-201ENST00000380871 ATP6V1E2Q96A05 226 aa16.45■□□□□ 0.22
NKX3-1-201ENST00000380871 GPR22Q99680 433 aa16.45■□□□□ 0.22
NKX3-1-201ENST00000380871 ATXN3LQ9H3M9 355 aa16.45■□□□□ 0.22
NKX3-1-201ENST00000380871 ZBTB26Q9HCK0 441 aa16.45■□□□□ 0.22
NKX3-1-201ENST00000380871 SLC38A7Q9NVC3 462 aa16.45■□□□□ 0.22
NKX3-1-201ENST00000380871 PRG3Q9Y2Y8 225 aaPredicted RBP16.45■□□□□ 0.22
NKX3-1-201ENST00000380871 TCAF2A6NFQ2 919 aa16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 KCNU1A8MYU2 1149 aa16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 VAPBO95292 243 aa16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 PYGLP06737 847 aa16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 ASGR1P07306 291 aa16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 PPIDQ08752 370 aaKnown RBP16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 AMIGO2Q86SJ2 522 aa16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 EGFL6Q8IUX8 553 aa16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 SREK1Q8WXA9 508 aaKnown RBP16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 HIC2Q96JB3 615 aa16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 PHF12Q96QT6 1004 aa16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 TNFRSF12AQ9NP84 129 aa16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 SMIM31A0A1B0GVY4 71 aa16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 MANSC4A6NHS7 340 aaPredicted RBP16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 GABRDO14764 452 aa16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 RALGDSQ12967 914 aa16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 IL23RQ5VWK5 629 aa16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 LRRTM3Q86VH5 581 aa16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 COLEC11Q9BWP8 271 aa16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 ADA2Q9NZK5 511 aa16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 DUSP11O75319 330 aaKnown RBP16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 PCSK6P29122 969 aa16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 GRIK1P39086 918 aa16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 RPL5P46777 297 aaKnown RBP16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 LHX1P48742 406 aa16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 PGFP49763 221 aa16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 PCBP1Q15365 356 aaKnown RBP eCLIP16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 RGMBQ6NW40 437 aa16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 PGAM4Q8N0Y7 254 aa16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 PDCD6IPQ8WUM4 868 aaKnown RBP16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 DGCR14Q96DF8 476 aaKnown RBP16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 PRDM16Q9HAZ2 1276 aa16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 SLC2A6Q9UGQ3 507 aa16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 TTC3P53804 2025 aa16.44■□□□□ 0.22
NKX3-1-201ENST00000380871 hCG_2014768A0A024R1R8 64 aa16.43■□□□□ 0.22
NKX3-1-201ENST00000380871 C9IYK1 514 aa16.43■□□□□ 0.22
NKX3-1-201ENST00000380871 ACOT8O14734 319 aa16.43■□□□□ 0.22
NKX3-1-201ENST00000380871 AURKAO14965 403 aa16.43■□□□□ 0.22
NKX3-1-201ENST00000380871 LRIG2O94898 1065 aa16.43■□□□□ 0.22
NKX3-1-201ENST00000380871 MT-CO1P00395 513 aa16.43■□□□□ 0.22
NKX3-1-201ENST00000380871 ME2P23368 584 aa16.43■□□□□ 0.22
NKX3-1-201ENST00000380871 GJA9P57773 515 aa16.43■□□□□ 0.22
NKX3-1-201ENST00000380871 KCNA10Q16322 511 aa16.43■□□□□ 0.22
NKX3-1-201ENST00000380871 SH2D4BQ5SQS7 431 aa16.43■□□□□ 0.22
NKX3-1-201ENST00000380871 LRRC8EQ6NSJ5 796 aa16.43■□□□□ 0.22
NKX3-1-201ENST00000380871 TAC4Q86UU9 113 aa16.43■□□□□ 0.22
NKX3-1-201ENST00000380871 METTL23Q86XA0 190 aa16.43■□□□□ 0.22
NKX3-1-201ENST00000380871 ZNF354CQ86Y25 554 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms