RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 KLHL5Q96PQ7 755 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 PSMD13Q9UNM6 376 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 GSG1L2A8MUP6 293 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 RAMP2O60895 175 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 CCNCP24863 283 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 EPC2Q52LR7 807 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 DEF8Q6ZN54 512 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 BRSK2Q8IWQ3 736 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.38□□□□□ -0.91
VPS13A-203ENST00000360280 RUSC1Q9BVN2 902 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 CDADC1Q9BWV3 514 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 TTLL2Q9BWV7 592 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 TMEM2Q9UHN6 1383 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 TMEM5Q9Y2B1 443 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 NFKB1P19838 968 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 PPIBP23284 216 aaKnown RBP9.38□□□□□ -0.91
VPS13A-203ENST00000360280 PITPNAQ00169 270 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 TXNDC11Q6PKC3 985 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 GALNTL5Q7Z4T8 443 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 PLCZ1Q86YW0 608 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 VAT1Q99536 393 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 CAPN6Q9Y6Q1 641 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 QSOX1O00391 747 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 IFNA7P01567 189 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 SERPINA6P08185 405 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 ERCC2P18074 760 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 ADAM8P78325 824 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 VCPIP1Q96JH7 1222 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 ACOX1Q15067 660 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 LZTR1Q8N653 840 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 DENND6BQ8NEG7 585 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 HM13Q8TCT9 377 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 RBM4BQ9BQ04 359 aaKnown RBP9.37□□□□□ -0.91
VPS13A-203ENST00000360280 RBM4Q9BWF3 364 aaKnown RBP9.37□□□□□ -0.91
VPS13A-203ENST00000360280 MTMR4Q9NYA4 1195 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 PRAMEF33A0A0G2JMD5 474 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 H3BNH8 94 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 PRAMEF10O60809 474 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 SLC25A27O95847 323 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 C9P02748 559 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 CDKL1Q00532 357 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 RABL6Q3YEC7 729 aaPredicted RBP9.37□□□□□ -0.91
VPS13A-203ENST00000360280 SLC4A11Q8NBS3 891 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 ACTL7BQ9Y614 415 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 CYP27B1O15528 508 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 PKNOX1P55347 436 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 PPIL2Q13356 520 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 GCNT7Q6ZNI0 430 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 CHST15Q7LFX5 561 aaPredicted RBP9.37□□□□□ -0.91
VPS13A-203ENST00000360280 ACTL9Q8TC94 416 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 RFKQ969G6 155 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 MXRA8Q9BRK3 442 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 ZNF609O15014 1411 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 ZNF543Q08ER8 600 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 ACOT1Q86TX2 421 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 PCDH12Q9NPG4 1184 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 PPEF2O14830 753 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 IGSF6O95976 241 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 MT-CO1P00395 513 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 HMGCS2P54868 508 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 FOLH1Q04609 750 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 NKX1-1Q15270 411 aaPredicted RBP9.37□□□□□ -0.91
VPS13A-203ENST00000360280 RNF43Q68DV7 783 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 GNEQ9Y223 722 aaKnown RBP9.37□□□□□ -0.91
VPS13A-203ENST00000360280 FAM86C2PA6NEL3 165 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 NR4A1P22736 598 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 ST3GAL1Q11201 340 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 RBM20Q5T481 1227 aaKnown RBP9.37□□□□□ -0.91
VPS13A-203ENST00000360280 PIGKQ92643 395 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 TBL1YQ9BQ87 522 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 RBM22Q9NW64 420 aaKnown RBP eCLIP9.37□□□□□ -0.91
VPS13A-203ENST00000360280 TNS3Q68CZ2 1445 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 SERPINA3P01011 423 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 MBL2P11226 248 aaPredicted RBP9.37□□□□□ -0.91
VPS13A-203ENST00000360280 PFKFB4Q16877 469 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 CCDC54Q8NEL0 328 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 DPP7Q9UHL4 492 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 TPP1O14773 563 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 TFRCP02786 760 aaKnown RBP9.37□□□□□ -0.91
VPS13A-203ENST00000360280 NR2F1P10589 423 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 E2F2Q14209 437 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.37□□□□□ -0.91
VPS13A-203ENST00000360280 ZCCHC9Q8N567 271 aaKnown RBP9.37□□□□□ -0.91
VPS13A-203ENST00000360280 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.37□□□□□ -0.91
VPS13A-203ENST00000360280 C2CD2LO14523 706 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 AP5Z1O43299 807 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 SIN3BO75182 1162 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 UPP2O95045 317 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 ZNF234Q14588 700 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 PARK7Q99497 189 aaKnown RBP9.37□□□□□ -0.91
VPS13A-203ENST00000360280 TDRD3Q9H7E2 651 aaKnown RBP9.37□□□□□ -0.91
VPS13A-203ENST00000360280 EVA1BQ9NVM1 165 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 ABCG2Q9UNQ0 655 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 BCORL1Q5H9F3 1711 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 COX4I1P13073 169 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 STOMP27105 288 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 RAB15P59190 212 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 PTPRNQ16849 979 aa9.37□□□□□ -0.91
VPS13A-203ENST00000360280 FAM98AQ8NCA5 519 aaKnown RBP9.37□□□□□ -0.91
VPS13A-203ENST00000360280 SELENOMQ8WWX9 145 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms