RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 NT5MQ9NPB1 228 aa21.06■□□□□ 0.96
CCDC88B-203ENST00000359902 TCF7L2Q9NQB0 619 aa21.06■□□□□ 0.96
CCDC88B-203ENST00000359902 XPR1Q9UBH6 696 aa21.06■□□□□ 0.96
CCDC88B-203ENST00000359902 FRMPD3Q5JV73 1810 aa21.06■□□□□ 0.96
CCDC88B-203ENST00000359902 HDAC3O15379 428 aa21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 HAPLN1P10915 354 aaPredicted RBP21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 TFEBP19484 476 aa21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 PRDX6P30041 224 aa21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 CD151P48509 253 aa21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 ERFP50548 548 aa21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 KLF10Q13118 480 aa21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 VARS2Q5ST30 1063 aaKnown RBP21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 PGM2L1Q6PCE3 622 aa21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 FRMD7Q6ZUT3 714 aa21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 TMC7Q7Z402 723 aa21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 TTC9BQ8N6N2 239 aa21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 GPR152Q8TDT2 470 aa21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 FATE1Q969F0 183 aa21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 ELMO2Q96JJ3 720 aa21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 TMEM248Q9NWD8 314 aa21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 IL37Q9NZH6 218 aa21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 PCDHB5Q9Y5E4 795 aa21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 TLL2Q9Y6L7 1015 aa21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 TBX18O95935 607 aa21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 COX4I1P13073 169 aa21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 SLC10A7Q0GE19 358 aa21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 EFEMP1Q12805 493 aa21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 BLMHQ13867 455 aa21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 LSMEM2Q8N112 164 aa21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 ATAD1Q8NBU5 361 aa21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 ACTRT2Q8TDY3 377 aa21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 KLHL5Q96PQ7 755 aa21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 WDR55Q9H6Y2 383 aaPredicted RBP21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 GPAMQ9HCL2 828 aa21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 ZDHHC2Q9UIJ5 367 aa21.05■□□□□ 0.96
CCDC88B-203ENST00000359902 PLXNA3P51805 1871 aa21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 GOLGA8QA0A0J9YX86 632 aa21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 GOLGA8OA6NCC3 632 aa21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 GOLGA8NF8WBI6 632 aa21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 AURKAO14965 403 aa21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 GRID2O43424 1007 aa21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 CCNT2O60583 730 aaKnown RBP21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 TADA2AO75478 443 aa21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 CHRM1P11229 460 aaPredicted RBP21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 ANPEPP15144 967 aa21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 MAXP61244 160 aa21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 BTKQ06187 659 aa21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 PRKAA1Q13131 559 aa21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 IHHQ14623 411 aa21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 PSMD5Q16401 504 aa21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 RNF186Q9NXI6 227 aa21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 ANGPTL2Q9UKU9 493 aa21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 ITGAXP20702 1163 aa21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 CD86P42081 329 aa21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 MAGEA11P43364 429 aa21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 PSEN1P49768 467 aa21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 HK2P52789 917 aa21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 MSLNQ13421 630 aaPredicted RBP21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 PEX6Q13608 980 aa21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 TSTD2Q5T7W7 516 aa21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 MARC1Q5VT66 337 aa21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 SEL1L3Q68CR1 1132 aa21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 ANO7Q6IWH7 933 aa21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 CNSTQ6PJW8 725 aa21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 RNF180Q86T96 592 aa21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 OMDQ99983 421 aa21.04■□□□□ 0.96
CCDC88B-203ENST00000359902 IGLV3-10A0A075B6K4 115 aa21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 HEATR9A2RTY3 570 aa21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 KIF1CO43896 1103 aaKnown RBP21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 ZMPSTE24O75844 475 aa21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 MMP2P08253 660 aa21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 SERPINH1P50454 418 aaKnown RBP21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 POU4F1Q01851 419 aa21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 ITKQ08881 620 aa21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 CTXN3Q4LDR2 81 aa21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 TMCO4Q5TGY1 634 aa21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 KIAA0408Q6ZU52 694 aa21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 IGSF8Q969P0 613 aa21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 UNKQ9C0B0 810 aaKnown RBP21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 DOCK4Q8N1I0 1966 aa21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 A0A087X1B8 175 aa21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 FAM92AA1XBS5 289 aa21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 LIN7AO14910 233 aaPredicted RBP21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 SYN3O14994 580 aa21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 AP2B1P63010 937 aa21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 LSM12Q3MHD2 195 aaKnown RBP21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 ZNF789Q5FWF6 425 aa21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 ARMC3Q5W041 872 aa21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 FBXL22Q6P050 247 aa21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 HEXDCQ8WVB3 486 aa21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 PSMG2Q969U7 264 aa21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 MIEF2Q96C03 454 aa21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 PABPC5Q96DU9 382 aaKnown RBP21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 LENG8Q96PV6 779 aaPredicted RBP21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 FAM193BQ96PV7 902 aaPredicted RBP21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 RANBP9Q96S59 729 aa21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 OSBPL1AQ9BXW6 950 aa21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 MRPL46Q9H2W6 279 aaKnown RBP21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 VPS45Q9NRW7 570 aa21.03■□□□□ 0.96
CCDC88B-203ENST00000359902 DONSONQ9NYP3 566 aa21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms